Pinned Repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Blasso
Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
Census
Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
DISCOVER
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
irGSEA
The integration of single cell rank-based gene set enrichment analysis
mUC-M1
Comprehensive analysis highlighted and verified the robust predictive value of Macrophage M1 and its essential role in immunophenotype determination among patients with mUC.
scSigR
Generate signature matrix from single cell data.
TMEscore
Calculating Tumor microenvironment score
IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
DongqiangZeng0808's Repositories
DongqiangZeng0808/TMEscore
Calculating Tumor microenvironment score
DongqiangZeng0808/Blasso
Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
DongqiangZeng0808/irGSEA
The integration of single cell rank-based gene set enrichment analysis
DongqiangZeng0808/mUC-M1
Comprehensive analysis highlighted and verified the robust predictive value of Macrophage M1 and its essential role in immunophenotype determination among patients with mUC.
DongqiangZeng0808/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
DongqiangZeng0808/Census
Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
DongqiangZeng0808/DISCOVER
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
DongqiangZeng0808/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
DongqiangZeng0808/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
DongqiangZeng0808/scSigR
Generate signature matrix from single cell data.
DongqiangZeng0808/ARMET
Algorithms for Resolving Microenvironment Transcriptomes
DongqiangZeng0808/copykat
DongqiangZeng0808/scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
DongqiangZeng0808/splatter
Simple simulation of single-cell RNA sequencing data