Pinned Repositories
alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
alevinQC
Create QC and summary reports for Alevin output
Bloom-Filter-Implementation
This repository is for bloom filter and block bloom filter implementation
book
:books: All programming languages books
CellOracle
This is the alpha version of the CellOracle package
chrombpnet
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
codedaddies_list
Rust-tutorials
The slides and examples used in UMD CMSC388Z -- programming in rust
simpleaf
A rust framework to make using alevin-fry even simpler
single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
DongzeHE's Repositories
DongzeHE/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
DongzeHE/book
:books: All programming languages books
DongzeHE/Rust-tutorials
The slides and examples used in UMD CMSC388Z -- programming in rust
DongzeHE/simpleaf
A rust framework to make using alevin-fry even simpler
DongzeHE/single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
DongzeHE/alevinQC
Create QC and summary reports for Alevin output
DongzeHE/Bloom-Filter-Implementation
This repository is for bloom filter and block bloom filter implementation
DongzeHE/CellOracle
This is the alpha version of the CellOracle package
DongzeHE/chrombpnet
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
DongzeHE/codedaddies_list
DongzeHE/DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
DongzeHE/fishgill
filter BAM file and convert it to RAD
DongzeHE/fishpond
Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, and alevin-fry data.
DongzeHE/minnow
DongzeHE/All-Programming-E-Books-PDF
A Curated List Of Programming Books For C, C++ , Python, JavaScript, NodeJs, ReactJs, Web, JQuery, Flask, Dom, Angular, CSS, HTML for beginners, intermediate, advanced and experts
DongzeHE/GenomicRanges
GenomicRanges in Python
DongzeHE/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
DongzeHE/mofapy2
Multi-omics factor analysis v2
DongzeHE/poly-radar
DongzeHE/protocol-estuary
DongzeHE/pyroe
DongzeHE/roers
DongzeHE/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
DongzeHE/sc-SHC
Significance analysis for clustering single-cell RNA-sequencing data
DongzeHE/scpca-docs
User information about ScPCA processing
DongzeHE/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
DongzeHE/scvelo
RNA Velocity generalized through dynamical modeling
DongzeHE/simpleaf_citeseq_nextflow
A nextflow workflow for processing CITE-seq data using simpleaf
DongzeHE/Succinct-structure
CMSC858D succinct structure assigment
DongzeHE/usefulaf
Useful scripts and tools related to alevin-fry