DongzeHE

PhD student in Computational biology at the Unversity of Maryland

University of Maryland, College ParkDMV

Pinned Repositories

alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Language:Rust2 1 00
alevinQC
Create QC and summary reports for Alevin output
Language:R00
Bloom-Filter-Implementation
This repository is for bloom filter and block bloom filter implementation
Language:C++0 1 00
book
:books: All programming languages books
1 0 00
CellOracle
This is the alpha version of the CellOracle package
Language:Python00
chrombpnet
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
Language:Jupyter Notebook0 0 00
codedaddies_list
Language:Python0 1 00
Rust-tutorials
The slides and examples used in UMD CMSC388Z -- programming in rust
Language:Rust1 1 00
simpleaf
A rust framework to make using alevin-fry even simpler
Language:Rust10
single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
Language:Jupyter Notebook1 0 00

DongzeHE's Repositories

DongzeHE/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Language:Rust2 1 00
DongzeHE/book
:books: All programming languages books
1 0 00
DongzeHE/Rust-tutorials
The slides and examples used in UMD CMSC388Z -- programming in rust
Language:Rust1 1 00
DongzeHE/simpleaf
A rust framework to make using alevin-fry even simpler
Language:Rust10
DongzeHE/single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
Language:Jupyter Notebook1 0 00
DongzeHE/alevinQC
Create QC and summary reports for Alevin output
Language:R00
DongzeHE/Bloom-Filter-Implementation
This repository is for bloom filter and block bloom filter implementation
Language:C++0 1 00
DongzeHE/CellOracle
This is the alpha version of the CellOracle package
Language:Python00
DongzeHE/chrombpnet
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
Language:Jupyter Notebook0 0 00
DongzeHE/codedaddies_list
Language:Python0 1 00
DongzeHE/DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
Language:R0 0 00
DongzeHE/fishgill
filter BAM file and convert it to RAD
Language:Rust0 1 00
DongzeHE/fishpond
Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, and alevin-fry data.
Language:R00
DongzeHE/libgff
A simple GFF/GTF parsing library in C++
0 0 00
DongzeHE/minnow
Language:C++00
DongzeHE/All-Programming-E-Books-PDF
A Curated List Of Programming Books For C, C++ , Python, JavaScript, NodeJs, ReactJs, Web, JQuery, Flask, Dom, Angular, CSS, HTML for beginners, intermediate, advanced and experts
DongzeHE/GenomicRanges
GenomicRanges in Python
Language:Python0 0
DongzeHE/poly-radar
Language:Rust1 0
DongzeHE/protocol-estuary
Language:Jsonnet0 0
DongzeHE/pyroe
Language:Python
DongzeHE/roers
DongzeHE/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Language:C++
DongzeHE/sc-SHC
Significance analysis for clustering single-cell RNA-sequencing data
DongzeHE/scvelo
RNA Velocity generalized through dynamical modeling
Language:Python0 0
DongzeHE/simpleaf_citeseq_nextflow
A nextflow workflow for processing CITE-seq data using simpleaf
Language:Shell1 0
DongzeHE/Succinct-structure
CMSC858D succinct structure assigment
Language:R
DongzeHE/The-result-if-you-are-stopped-by-police
Predicting the result if you are stopped by police in Montana today by your car's color, your gender and age.
DongzeHE/usefulaf
Useful scripts and tools related to alevin-fry
Language:Rust