Duhaime Lab

esa2020_metav_decon_poster

This repository is for the code used to process the data and figures on metavirome decontamination presented as a late-breaking poster at ESA 2020.

global_drinking_water_viromes_Hegarty_et_al_2022

Hannigan_ConjunctisViribus_mSystems_2017

Using graph database techniques to understand the infectious relationships between bacteria and phages.

PSA_Phage_MultiOmics_Howard-Varonaetal2019

Repository to accompany Pseudoalteromonas phage infection omics, Howard-Varona et al 2019.

RChandross_undergrad_thesis_2021_coral_microbialization

Code and data from the undergraduate thesis of Rebecca Chandross

Tracking_Ma_viruses_and_infection_dynamics_across_distinct_Ma_bloom_phases

VHIP_analyses_Bastien_et_al_2023

VirusHostInteractionPredictor

Python tool to predict ecological virus-host infection

VSTE

Repository for the Viral Sorting Tools Evaluation (VSTE) project in the Duhaime lab.

WWTP_MPs_study_Michielssen_et_al_

Data repository and RMarkdown for study: Fate of Microplastics in Wastewater Treatment Plants Depends on Unit Processes Used

DuhaimeLab/VirusHostInteractionPredictor

Python tool to predict ecological virus-host infection

DuhaimeLab/VSTE

Repository for the Viral Sorting Tools Evaluation (VSTE) project in the Duhaime lab.

DuhaimeLab/global_drinking_water_viromes_Hegarty_et_al_2022

DuhaimeLab/Hannigan_ConjunctisViribus_mSystems_2017

Using graph database techniques to understand the infectious relationships between bacteria and phages.

DuhaimeLab/PSA_Phage_MultiOmics_Howard-Varonaetal2019

Repository to accompany Pseudoalteromonas phage infection omics, Howard-Varona et al 2019.

DuhaimeLab/WWTP_MPs_study_Michielssen_et_al_

Data repository and RMarkdown for study: Fate of Microplastics in Wastewater Treatment Plants Depends on Unit Processes Used

DuhaimeLab/esa2020_metav_decon_poster

This repository is for the code used to process the data and figures on metavirome decontamination presented as a late-breaking poster at ESA 2020.

DuhaimeLab/Lake_Cadagno_microbial_loop_Saini_et_al_2021

DuhaimeLab/RChandross_undergrad_thesis_2021_coral_microbialization

Code and data from the undergraduate thesis of Rebecca Chandross

DuhaimeLab/Tracking_Ma_viruses_and_infection_dynamics_across_distinct_Ma_bloom_phases

DuhaimeLab/VHIP_analyses_Bastien_et_al_2023

DuhaimeLab/flux-tools

Code and demos for running scripts on FLUX

DuhaimeLab/Frontiers_2017_GreatLakesPlasticDistrib

This repository contains the .rmd file and data files used in "Distribution and modeled transport of plastic pollution in the Great Lakes, the world’s largest freshwater resource"

DuhaimeLab/Funfunfun

Just one of those repositories for fun stuff, ya know?

DuhaimeLab/Hannigan_CRCVirome_PNAS_2017

Investigating the gut virus communities associated with colon cancer.

DuhaimeLab/HowToCollaborate

A quick intro to collaborating on a manuscript with GitHub.

DuhaimeLab/PSAPhageGnms

Analysis for Comparative Genomics of Pseudoalteromonas phages

DuhaimeLab/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

DuhaimeLab/Virus_Knowledgebase

Our lab's collection of shared resources for learning about viruses