EBI-Metagenomics/MGnifyR

Issues

• Locate fastq data associated with MGnify analyses

  #8 opened 3 years ago by s-meaden
  1

• Diversity indices

  #5 opened 3 months ago by mweberr
  1

• Error during installation

  #36 opened 10 months ago by vgopikaa
  1

• Create sticker image for this pkg (at least for the website)?

  #29 opened a year ago by antagomir
  3

• doQuery() error with assemblies

  #27 opened a year ago by Cal-Thoma
  10

• Update examples at EBI

  #30 opened a year ago by antagomir
  0

• Add link to MGnify itself in the README

  #25 opened a year ago by antagomir
  0

• Update examples to OMA

  #18 opened a year ago by antagomir
  0

• MGnifyR - query samples by depth

  #17 opened a year ago by alexschickele
  0

• Support for the (Tree)SummarizedExperiment data container

  #6 opened 3 years ago by antagomir
  2

• MGnifyR filter out samples during the phyloseq object building step

  #9 opened 2 years ago by Ales-ibt
  1

• mgnify_get_analyses_results stops with the error: Error in t.default(unlist(c(json$attributes[baseattrlist], metlist))) : argument is not a matrix

  #3 opened 3 years ago by rigormortis0
  1

• Could not find function "mgnify_get_downloads"

  #2 opened 3 years ago by stitam
  1

• Can we download .fna files of all MAGs from species catalogues through MGnifyR?

  #4 opened 3 years ago by yazhinia
  2

• mgnify_get_download_urls stops with the following error: Error in `colnames<-`(`*tmp*`, value = `*vtmp*`) : attempt to set 'colnames' on an object with less than two dimensions

  #1 opened 3 years ago by kafker
  3