EBISPOT/gwas-sumstats-validator

Issues

• TypeError: read_csv() got an unexpected keyword argument 'error_bad_lines'

  #72 opened a year ago
  1

• investigate the use of Pandera

  #70 opened a year ago
  1

• reimplement with csv validator lib

  #65 opened 2 years ago
  1

• add duplication and autosome check to validator

  #64 opened 2 years ago
  0

• Build and deploy to pypi is failing

  #60 opened 2 years ago
  2

• validator update so OR should be positive

  #56 opened 2 years ago
  3

• option to drop bad lines isn't working

  #54 opened 2 years ago
  3

• Update schema to meet the recommendations from the working groups

  #53 opened a year ago
  1

• Enable schema versioning

  #52 opened 3 years ago
  1

• Documentation should clarify how to run the validator script for non-Python users

  #51 opened 3 years ago
  4

• conda env for ss-validate not working

  #50 opened 3 years ago
  1

• Validator should catch error when file is blank

  #49 opened a year ago
  1

• Report a useful error message if the file is not a table

  #48 opened a year ago
  1

• drop invalid lines arg not having expected outcome

  #42 opened 3 years ago
  1

• bug when there are no pvalues in scientific notation

  #40 opened 4 years ago
  0

• p-values of 1 should pass

  #37 opened 4 years ago
  0

• validator should not pass date where quotations are given in fields

  #27 opened a year ago
  1

• Make the validator more portable/user friendly

  #23 opened a year ago
  1

• spit the schema out into version controlled schema

  #21 opened a year ago
  1

• sumstats validator improvements

  #22 opened 4 years ago
  1

• handle null bytes in the file

  #20 opened 4 years ago
  0

• Mock validate option

  #19 opened 3 years ago
  0

• pip install error

  #18 opened 4 years ago
  2

• when valid, say so in the log file

  #17 opened 4 years ago
  0

• Add progress bar

  #16 opened 4 years ago
  0

• Validator fails when numerical values are smaller than the system limits

  #15 opened 4 years ago
  5

• import ss-validate pacakge

  #13 opened 4 years ago
  1

• enable compatibility for windows users

  #11 opened 4 years ago
  0

• Set up CI/CD

  #10 opened 4 years ago
  2

• Add minimum number of SNPs to validator

  #8 opened 4 years ago
  6

• rows are valid if specific combinations of fields are present

  #3 opened 4 years ago
  0

• validator should have another option for user uploaded sumstats file

  #2 opened 4 years ago
  0

• validator should inform user which headers it has found/not found in the file

  #1 opened 4 years ago
  0