ENCODE-DCC/hic-pipeline

Issues

• Questions about processing single-end Hi-C reads from Ultima Genomics platform

  #189 opened 5 months ago by yihangs
  0

• Inconsistent statistic result

  #188 opened 7 months ago by hiiiyilingzhang
  0

• Failing on test data

  #187 opened 9 months ago by pittroffA
  1

• Can't call loops on SLURM

  #178 opened 2 years ago by wkc1986
  5

• should we define "ligation_site_regex" if we choose enzyme "none"?

  #179 opened 2 years ago by shengqh
  0

• test hic fail on aws

  #152 opened 2 years ago by jarekgeneg
  7

• Croo: list index out of range

  #94 opened 2 years ago by guma44
  4

• Verify installation error

  #147 opened 3 years ago by gnir
  1

• hic-pipeline seems have a bug

  #120 opened 3 years ago by tanzhengtang
  5

• Add ability to put all output files into one directory.

  #115 opened 3 years ago by HenryCWong
  5

• fail to locate the index files

  #107 opened 3 years ago by HenryCWong
  6

• Running into error using bwa-mem2

  #106 opened 3 years ago by HenryCWong
  9

• Running into awk error on chimeric_sam_specific task

  #105 opened 3 years ago by HenryCWong
  3

• Running without docker flag and with custom docker container

  #103 opened 3 years ago by HenryCWong
  14

• Error on usage tutorial/test

  #102 opened 3 years ago by HenryCWong
  15

• Is the block reachable?

  #100 opened 3 years ago by guma44
  3

• Restriction sites not available

  #95 opened 3 years ago by guma44
  2

• How does the pipeline utilize technical/biological replicates?

  #89 opened 4 years ago by edsu7
  4

• Support for Arima Restriction Enzyme

  #65 opened 4 years ago by andreevakali
  2

• Error running example on local computer

  #54 opened 4 years ago by andreevakali
  10

• Errors when running the test data

  #41 opened 5 years ago by yangxiaofeill
  1

• merge and merge_sort in subworkflow are not useful

  #37 opened 5 years ago by caofan
  0

• test issue

  #1 opened 6 years ago by gabdank
  0