ENCODE DCC

Pinned Repositories

atac-seq-pipeline
ENCODE ATAC-seq pipeline
Language:Python388 25 314174
checkfiles
Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.
Language:Python2 17 00
chip-seq-pipeline
ENCODE Uniform processing pipeline for ChIP-seq
Language:Python120 39 253
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
Language:Python246 25 176123
encoded
Metadata database for ENCODE project
Language:JavaScript110 30 3351
kentUtils
UCSC command line bioinformatic utilities
Language:C168 45 095
pyencoded-tools
Language:Jupyter Notebook10 32 213
rna-seq-pipeline
Language:Python141 17 4262
snovault
The SnoVault general purpose hybrid object-relational database
Language:Python16 32 228
WranglerScripts
Collection of scripts used by the wranglers to interact with the servers
Language:Python5 25 04

ENCODE DCC's Repositories

ENCODE-DCC/metadata-to-pipelines
Repository for code used in translating encoded metadata to pipelines.
1
ENCODE-DCC/trackhub
create, manage, and upload track hubs for use in the UCSC genome browser
Language:Python1 22 01
ENCODE-DCC/pyramid_persona
Pyramid plugin to use persona for authentication
Language:Python15 0