Pinned Repositories
3D_IMC_publication
academic-poster-template
An HTML+CSS template for making more accessible posters
anndata-tutorials
Use cases for anndata.
AnnoProbe
annotator
asreview
Active learning for systematic reviews
Batch-Effect
mimic-cxr
Code, documentation, and discussion around the MIMIC-CXR database
squidpy
Spatial Single Cell Analysis in Python
unrpyc
A ren'py script decompiler
Emberwhirl's Repositories
Emberwhirl/asreview
Active learning for systematic reviews
Emberwhirl/awesome-materials-informatics
Curated list of known efforts in materials informatics = modern materials science
Emberwhirl/BDA_course_Aalto
Bayesian Data Analysis course at Aalto
Emberwhirl/biology-for-ai
learning biology syllabus, geared for machine learning folks
Emberwhirl/CarrierVanityName
Emberwhirl/cheatsheets
Emberwhirl/curatedPCaData
Curated Prostate Cancer Data R-package
Emberwhirl/DiffSinger
DiffSinger: Singing Voice Synthesis via Shallow Diffusion Mechanism (SVS & TTS); AAAI 2022; Official code
Emberwhirl/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Emberwhirl/GEMMA
Genome-wide Efficient Mixed Model Association
Emberwhirl/ggGenshin
Genshin palettes for ggplot2 and Matplotlib
Emberwhirl/GLWTPL
"Good Luck With That" Public License
Emberwhirl/gpt_academic
为ChatGPT/GLM提供图形交互界面，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm2等本地模型。兼容文心一言, moss, llama2, rwkv, claude2, 通义千问, 书生, 讯飞星火等。
Emberwhirl/MDPI_explorer
This repository has a series of R scripts to explore, via web scrapping package rvest, scientific journal metrics. In particular, is focused on MDPI and Nature's Scientific Reports. Here is a guide to replicate the analysis or use it in a different journal: https://pgomba.github.io/MDPI_explorer/
Emberwhirl/metamedian
Meta-Analysis of Medians
Emberwhirl/MIMIC-Diff-VQA
Emberwhirl/nextcloud_share_url_downloader
Download files from and list content of NextCloud (password protected) share directly from the command line without needing a webbrowser.
Emberwhirl/PDAC_Nature_2023
Emberwhirl/polarVolcaNoseR
a polar representation of multiple volcano plots
Emberwhirl/reviews
Student reviews for OMS courses. Built with NextJS and Typescript. Backed by Sanity CMS. Deployed on Vercel.
Emberwhirl/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
Emberwhirl/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Emberwhirl/single-cell-papers-with-code
Papers with code for single cell related papers
Emberwhirl/smiley-sans
得意黑 Smiley Sans
Emberwhirl/SRT_take_home
Emberwhirl/time-series-algorithm-recipes
Source Code for 'Time Series Algorithm Recipes' by Akshay R Kulkarni, Adarsha Shivananda, Anoosh Kulkarni, and V Adithya Krishnan
Emberwhirl/treedata-book
:books: a complete reference book for treeio, tidytree and ggtree packages
Emberwhirl/utag
Emberwhirl/Weasis
Weasis is a DICOM viewer available as a desktop application or as a web-based application.
Emberwhirl/wenyan
文言文編程語言 A programming language for the ancient Chinese.