Pinned Repositories
beyond_R0
Code and data for final epidemic size calculations
covid19_npi_china
Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China
COVID_crowding
Crowding and the shape of COVID-19 epidemics
COVID_Hong_Kong
COVID data analysis from Hong Kong
Ebola_SitReps_Uganda_2022
Digitizing Ebola SitReps from Uganda
Emergent_Epidemics_Lab_nCoV2019
An RShiny App for mapping nCoV2019 line list data
H5N1_US2024_timeline
Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States
infectious_disease_predictability
Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
Puerto_Rico_Arbovirus_Data
Arbovirus and dengue data from Puerto Rico
US_influenza_data_1998_09-2019
Data on US ILI, influenza pos lab tests, and total influenza cases from 1998-2019
Emergent Epidemics Lab's Repositories
Emergent-Epidemics/H5N1_US2024_timeline
Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States
Emergent-Epidemics/covid19_npi_china
Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China
Emergent-Epidemics/infectious_disease_predictability
Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
Emergent-Epidemics/Emergent_Epidemics_Lab_nCoV2019
An RShiny App for mapping nCoV2019 line list data
Emergent-Epidemics/Puerto_Rico_Arbovirus_Data
Arbovirus and dengue data from Puerto Rico
Emergent-Epidemics/beyond_R0
Code and data for final epidemic size calculations
Emergent-Epidemics/COVID_crowding
Crowding and the shape of COVID-19 epidemics
Emergent-Epidemics/Ebola_SitReps_Uganda_2022
Digitizing Ebola SitReps from Uganda
Emergent-Epidemics/US_influenza_data_1998_09-2019
Data on US ILI, influenza pos lab tests, and total influenza cases from 1998-2019
Emergent-Epidemics/COVID_Hong_Kong
COVID data analysis from Hong Kong
Emergent-Epidemics/eeid_mobility
Analysis of Baidu mobility data for EEID
Emergent-Epidemics/ma_covid
MA Dept. of Public Health data on COVID19
Emergent-Epidemics/ca_covid
California COVID data
Emergent-Epidemics/COVID_Mexico
Analyses of COVID-19 data from Mexico
Emergent-Epidemics/influenza_surveillance_bias_texas
Code and data for, "Socioeconomic bias in influenza surveillance"
Emergent-Epidemics/MA_COVID_wastewater
Plotting wastewater surveillance data for SARS-CoV-2 in MA
Emergent-Epidemics/NNDS_CDC_pneumococcal
US state-level data from the CDC on invasive pneumococcal disease
Emergent-Epidemics/pathogen_containment
Analysis of outbreak extinction probabilities
Emergent-Epidemics/statcomp
Emergent-Epidemics/USDA_cattle_data
Emergent-Epidemics/VON_NICU_2018
Code for The Interhospital Transfer Network for Very Low Birth Weight Infants in the United States
Emergent-Epidemics/wastewater_scan_analysis
Analysis of wastewater scan pathogen surveillance data