/COVID_Mexico

Analyses of COVID-19 data from Mexico

Primary LanguageRMIT LicenseMIT

Spatial scales of COVID-19 transmission in Mexico

During outbreaks of emerging infectious diseases, internationally connected cities often experience large and early outbreaks, while rural regions follow after some delay. This hierarchical structure of disease spread is influenced primarily by the multi-scale structure of human mobility. However, during the COVID-19 epidemic, public health responses typically did not take into consideration the explicit spatial structure of human mobility when designing non-pharmaceutical interventions (NPIs). NPIs were applied primarily at national or regional scales [10]. Here we use weekly anonymized and aggregated human mobility data and spatially highly resolved data on COVID-19 cases at the municipality level in Mexico to investigate how behavioural changes in response to the pandemic have altered the spatial scales of transmission and interventions during its first wave (March - June 2020). We find that the epidemic dynamics in Mexico were initially driven by SARS-CoV-2 exports from Mexico State and Mexico City, where early outbreaks occurred. The mobility network shifted after the implementation of interventions in late March 2020, and the mobility network communities became more disjointed while epidemics in these communities became increasingly synchronised. Our results provide dynamic insights into how to use network science and epidemiological modelling to inform the spatial scale at which interventions are most impactful in mitigating the spread of COVID-19 and infectious diseases in general.

Citation

Klein, B.$, Hartle, H., Shrestha, M., Zenteno, A.C., Cordera, D.B.S., Nicolas-Carlock, J.R., Bento, A.I., Althouse, B.M., Gutierrez, B., Escalera-Zamudio, M., Reyes-Sandoval, A.$, Scarpino, S.V.$, and Kraemer, M.U.G.$ 2023. Spatial scales of COVID-19 transmission in Mexico. arXiv preprint arXiv:2301.13256.

$Correspondence should be addressed to b.klein@northeastern.edu (B.K.); alberto_diaz@uaeh.edu.mx (A. R-S.); s.scarpino@northeastern.edu (S.V.S.); moritz.kraemer@zoo.ox.ac.uk (M.U.G.K.).

Manuscript submission version of the code and data can be accessed via Zenodo: DOI

Data Availability

  1. Currently, all files in "Data" must be obtained from the authors.

Acknowledgements

We want to thank all the individuals and organizations across the world who have been willing and able to report data in as open and timely manner as possible.

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