snRNA-seq code for the manuscript "TAF1-dependent transcriptional dysregulation underlies multiple sclerosis" Rodríguez-López & Hernández et al. 2024
snRNA-seq for 6 samples processed in two batches (first batch n = 2, second batch n = 1) from the whole mouse striatum from 2 month-old WT (n = 3) and Taf1d38 (n = 3) mice.
Legend for the conditions:
KO=Taf1d38
WT=Control/CT
GEO accession: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE255578
single cell data can be browsed at: https://castelobranco.shinyapps.io/snrnaseq_ct_vs_taf1ex38del/
Legend shinyapp:
Dimension reduction UMAP
Used clusters resolution SCT_snn_res.1
Annotated celltypes orig.ident