Pinned Repositories
ASCHROM
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
awesome_spatial_omics
tools and notes for spatial omics
bioicons
A library of free open source icons for science illustrations in biology and chemistry
brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
cell_type_enrichment_pipeline
ClusterFoldSimilarity
Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
Floriddia_et_al_2019
Jaekel_Agirre_et_al_2018
Code and data from the manuscript (Jäkel and Agirre et. al. 2019, Altered human oligodendrocyte heterogeneity in multiple sclerosis.)
Meijer_Agirre_scATACEAE_2020
Code and data from Meijer and Agirre et al.
Eneritz's Repositories
Eneritz/ASCHROM
Eneritz/awesome_spatial_omics
tools and notes for spatial omics
Eneritz/bioicons
A library of free open source icons for science illustrations in biology and chemistry
Eneritz/brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
Eneritz/ClusterFoldSimilarity
Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
Eneritz/Floriddia_et_al_2019
Eneritz/Jaekel_Agirre_et_al_2018
Code and data from the manuscript (Jäkel and Agirre et. al. 2019, Altered human oligodendrocyte heterogeneity in multiple sclerosis.)
Eneritz/Meijer_Agirre_scATACEAE_2020
Code and data from Meijer and Agirre et al.
Eneritz/configs
Config files used to define parameters specific to compute environments at different Institutions
Eneritz/CVRCFunc
Eneritz/FLAMES
Full-length transcriptome splicing and mutation analysis
Eneritz/hello_world
a repository
Eneritz/HLA-LA
Fast HLA type inference from whole-genome data
Eneritz/HMMRATAC
HMMRATAC peak caller for ATAC-seq data
Eneritz/ldsc
LD Score Regression (LDSC)
Eneritz/MPRA_oligo_barcode_pipeline
Eneritz/MPRAflow
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
Eneritz/psix
Eneritz/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
Eneritz/SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
Eneritz/SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
Eneritz/SCASL
single-cell clustering based on alternative splicing landscapes
Eneritz/ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
Eneritz/ShinyMultiomeUiO
ShinyMultiomeUiO Shiny R based web tool for
Eneritz/SR_scripts
Eneritz/TAF1_2024
Eneritz/TALON
Technology agnostic long read analysis pipeline for transcriptomes
Eneritz/Tangram
Spatial alignment of single cell transcriptomic data.
Eneritz/unikmer
a versatile toolkit for k-mers with taxonomic information
Eneritz/wf-single-cell