README: Instructions miss to initialize HTSlib submodules
Closed this issue · 3 comments
Lines 56 to 62 in b082056
The above instructions miss to initialize the submodules as documented by HTSlib:
https://github.com/samtools/htslib/blob/f307dfbf5c7723956e788e0bdab269fe3d626b83/INSTALL#L66-L72
Dear @paulmenzel ,
Thank you for your interest in Wiggletools, and for flagging this up to us.
For the records, and while waiting for the PR, please find below a couple of ways to fix this.
After having clones the htslib repo
cd htslib
git submodule update --init --recursive
make install
Or even before cloning the htslib repo, to install the htslib library
git clone --recurse-submodules https://github.com/samtools/htslib.git
cd htslib
make install
Hello both,
Thanks for the report and the fix, the PR was just merged.
Regards,
Daniel
@sgiorgetti, thank you for documenting the instructions also in this issue.
@ALL, thank you for the quick improvement done by merge/pull request #81.
PS: If you add the tag
Resolves: #80
GitHub is going to link the issue and merge/pull request and automatically close the issue, once the merge/pull request is submitted.