Pinned Repositories
auto-qa
Automated quality assurance measuring for brain imaging data
awesoMRI-QC
A curated list of measures, tools, and references for MRI quality control (QC).
BrainImagingPipelines
BIPs
C-PAC
Configurable Pipeline for the Analysis of Connectomes
C-PAC_templates
Templates and atlases that aren't included in Neuroparc and are packaged in C-PAC
C-PAC_tutorials
Tutorials for C-PAC
cpac
A convenience wrapper for https://github.com/FCP-INDI/C-PAC that provides a simple command line interface.
fcp-indi.github.io
Github Pages Repo for FCP-INDI
indi_bidsification
Scripts related to the process of converting INDI datasets into BIDS format.
nki-rs-preproc
C-PAC configuration YAMLs and other resources for preprocessing the NKI-RS.
FCP-INDI's Repositories
FCP-INDI/C-PAC
Configurable Pipeline for the Analysis of Connectomes
FCP-INDI/cpac
A convenience wrapper for https://github.com/FCP-INDI/C-PAC that provides a simple command line interface.
FCP-INDI/indi_bidsification
Scripts related to the process of converting INDI datasets into BIDS format.
FCP-INDI/C-PAC_templates
Templates and atlases that aren't included in Neuroparc and are packaged in C-PAC
FCP-INDI/fcp-indi.github.io
Github Pages Repo for FCP-INDI
FCP-INDI/awesoMRI-QC
A curated list of measures, tools, and references for MRI quality control (QC).
FCP-INDI/C-PAC_GUI
A new GUI for C-PAC
FCP-INDI/C-PAC_tutorials
Tutorials for C-PAC
FCP-INDI/cpac_outputs_to_bids
Configurable script to convert CPAC outputs to BIDS format, greatly reduces the amount of storage needed for outputs, and works with BIDS APPS!
FCP-INDI/cpac_run_logs
Repository for information about C-PAC runs.
FCP-INDI/nki-rs-preproc
C-PAC configuration YAMLs and other resources for preprocessing the NKI-RS.
FCP-INDI/CPAC_regtest_pack
FCP-INDI/hpc_benchmark
Your friendly neighborhood lightweight utility for monitoring resource usage of your pipelines and analyses.
FCP-INDI/reg-suite
regression testing suite built for C-PAC
FCP-INDI/.github
This repository houses default community health files for GitHub repositories for the 1000 Functional Connectomes Project, the International Neuroimaging Data-Sharing Initiative and the Computational Neuroimaging Lab at the Child Mind Institute.
FCP-INDI/app-C-PAC-brainlife.io
This is the official C-PAC (Configurable Pipeline for the Analysis of Connectomes) brainlife.io app. Currently this app runs either the default pipeline or one of our preconfigured pipelines.
FCP-INDI/C-PAC_regression_dashboard
Dashboard for C-PAC regression suite correlations
FCP-INDI/ciftify
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
FCP-INDI/CPAC-Development
FCP-INDI/dki_preproc
FCP-INDI/EPI-DistCorr
FCP-INDI/fcp_indi_bucket_maintenance
Scripts, how tos, FAQs, and issues related to maintaining the FCP-INDI public S3 bucket.
FCP-INDI/INDI-Tools
Utilities developed for interaction with the AWS cloud
FCP-INDI/nki-rs-webpages
Webpages for the NKI RS Enhanced Website
FCP-INDI/regtest-runlogs
Repository of logs from remote regression test runs
FCP-INDI/rocklandsample
Tools for interacting with Rockland Sample data in the AWS cloud.
FCP-INDI/s3-webpages
Documentation for the FCP-INDI AWS S3 bucket.
FCP-INDI/slurm_testing
TEMPORARY FORK FOR TESTING
FCP-INDI/theodore
A C-PAC utility.
FCP-INDI/TheWay
Boilerplate scripts for running workflows on Penn clusters