FCP-INDI/C-PAC

Issues

• 🐛 Processing freezes when multiple cores are assigned

  #2135 opened 3 months ago by Pneumaethylamine
  23

• ✨ BOLD masking steps for `coregistration_prep_fmriprep` (#2014 continued)

  #2022 opened a year ago by shnizzedy
  0

• 🐛 not running multiple subjects simultaneously

  #2098 opened 6 months ago by nimzodisaster
  2

• 🐛 SGE fails to start. Unset -S parameter?

  #2150 opened 2 months ago by nimzodisaster
  1

• ⚡️ Throttle `aCompCor_cosine_filter`

  #2057 opened 9 months ago by shnizzedy
  0

• Prepare longitudinal pipeline to be standalone

  #2133 opened 4 months ago by sgiavasis
  1

• 🐛 First two TRs not affected by bandpass filter

  #2152 opened a month ago by shnizzedy
  0

• ✨ Freesurfer-Ingress without data config

  #2086 opened 7 months ago by nx10
  0

• 🐛 FileNotFoundError for output 'out_file' of a TShift interface

  #2090 opened 7 months ago by DongHyoek
  1

• 🐛 Not Reading In Slice Timing json in Bids Dataset

  #2103 opened 6 months ago by nimzodisaster
  0

• 🐛 pipeline does not produce with/without ICAAROMA or two nuisance pipelines specified.

  #2149 opened 2 months ago by nimzodisaster
  4

• 🐛 `TypeError: string indices must be integers` when forking on `space: ['native', 'template']`

  #2018 opened 2 months ago by shnizzedy
  0

• 🐛 [fmriprep-ingress] pipeline failed to start

  #2144 opened 2 months ago by suxpert
  7

• ✨ Potential idea: repopulate certain Nifti header fields

  #2139 opened 3 months ago by sgiavasis
  2

• 🐛 [slice timing] unmatched tpattern and slices

  #2145 opened 2 months ago by suxpert
  3

• 🐛 Possibly safer to use `-ort` in `3dTProject` for `SpikeRegression` instead

  #2137 opened 3 months ago by sgiavasis
  0

• ✨ Nifti header orientation checks and decisions for downstream resources

  #2138 opened 3 months ago by sgiavasis
  1

• 🧹 Harmonize T1-mask pipeline config keys

  #2029 opened a year ago by nx10
  2

• 🐛 The output for the resource `"space-fsLR_den-32k_desc-FS_strainJ"` is set to `"StrainJ_FS_dscalar"` and then reset to `"StrainJ_MSMSulc_dscalar"` three lines later.

  #2130 opened 4 months ago by shnizzedy
  0

• ♻️bids2table library for BIDS utils in CPAC, replacing and abstracting chunky utility functions

  #2116 opened 5 months ago by birajstha
  0

• 🐛 PyPI's `bids_validator` does not include CLI

  #2110 opened 5 months ago by shnizzedy
  0

• 🐛 [User-reported Bug] ICA AROMA crashes with 'DataFrame' object has no attribute 'append'. Did you mean: '_append' error

  #2117 opened 5 months ago by nimzodisaster
  1

• ✨ Integrate interface for SynthStrip skull-stripping

  #2118 opened 5 months ago by shnizzedy
  0

• 🐛 User-provided brain masks are not being read in to the resource list

  #2112 opened 5 months ago by nimzodisaster
  11

• 🐛 Functional preprocessing only pipeline not working

  #2113 opened 6 months ago by dseeburger3
  2

• ♻️ Always or by default have Function nodes "as module"s?

  #2109 opened 6 months ago by shnizzedy
  0

• 🎨 This `ts` isn't used anywhere. Do we care to assign it just to annotate, or should we drop this line?

  #2108 opened 6 months ago by shnizzedy
  0

• ♻️ DRY "Gathering the output file paths from" in `cpac_group_runner`

  #2107 opened 6 months ago by shnizzedy
  0

• ♻️ DRY `isc.py` and `isfc.py`

  #2106 opened 6 months ago by shnizzedy
  0

• ♻️ Replace `logger.error; sys.exit` pattern with `raise SpecificException` pattern

  #2105 opened 6 months ago by shnizzedy
  0

• 🐛 Freesurfer-based pipeline options cause a hang in a specific use case

  #2104 opened 6 months ago by sgiavasis
  0

• 🚀 Release v1.8.7

  #2099 opened 6 months ago by sgiavasis
  1

• ✨ Re-assess `abcd-options` related nodeblock designs and boundaries

  #2047 opened 10 months ago by sgiavasis
  0

• 🐛 fmriprep-ingress pipeline nuisance regression

  #2085 opened 7 months ago by klemens-egger
  9

• ✨ Generalize N4 bias correction option for all coregistration inputs

  #2084 opened 7 months ago by sgiavasis
  0

• 🐛 `Image Exception : #3 :: Attempted to multiply images/ROIs of different sizes`

  #2082 opened 8 months ago by shnizzedy
  1

• ✨ [User-requested Feature] Susceptibility Distortion Correction via SynBold-Disc

  #2068 opened 9 months ago by nimzodisaster
  2

• fmriprep-ingress regressor naming issue

  #2076 opened 8 months ago by sgiavasis
  0

• 🐛 Error during 'cpac utils data-config build ./data_settings.yml' re reference before assignment

  #2065 opened 9 months ago by nimzodisaster
  5

• 🐛 Autoversioning relying on `${GITHUB_BRANCH}`

  #2055 opened 9 months ago by shnizzedy
  0

• 🐛 FSL-BET `-m` flag (`mask_boolean`) should not be accessible to users

  #2052 opened 9 months ago by sgiavasis
  2

• 🐛 Surface cifti output named improperly

  #2008 opened a year ago by e-kenneally
  0

• ✨ Add ability to fork nuisance reg strategies with ingress

  #2050 opened 9 months ago by e-kenneally
  0

• ✨ Add derivatives_dir to data config builder

  #2049 opened 9 months ago by e-kenneally
  0

• ✨ Refactor transform-generating and warping nodeblocks

  #2041 opened 10 months ago by sgiavasis
  0

• ✨ Possibly add a shortcut/easier option for ANTs linear registration in the pipeline config

  #2038 opened 10 months ago by sgiavasis
  0

• 🐛 convert_motionxfm2itk sub-nodes crash randomly

  #2037 opened 10 months ago by e-kenneally
  0

• 👷 Refactor the CircleCI config to use Circle’s native parallelization

  #2007 opened a year ago by shnizzedy
  0

• 🐛 `FSLMerge`: `OSError: [Errno 7] Argument list too long: '/bin/sh'`

  #2006 opened a year ago by shnizzedy
  1

• 👷 CI tries to launch duplicate ACCESS runs with current triggers

  #2005 opened a year ago by shnizzedy
  0