FDA-ARGOS/data.argosdb

Issues

• Christie- Make slide for Jonathon explaining data push

  #488 opened a month ago by cwoodside1278
  0

• Create an ARGOS description for the HIVE Lab Pages

  #487 opened a month ago by cwoodside1278
  0

• Decision Tree figures

  #483 opened a month ago by cwoodside1278
  2

• Christie - October Emerging Pathogens

  #486 opened a month ago by cwoodside1278
  0

• Data Push of Old HIVE2 Tables

  #479 opened 2 months ago by cwoodside1278
  2

• Rerun some ARGOS orgs for the Paper

  #485 opened 2 months ago by cwoodside1278
  1

• Jonathon - HIVE3 CensuScope Blocker

  #460 opened 5 months ago by cwoodside1278
  6

• Christie - 'codon_table' in data dictionary needs to be changed to 'coding_system'

  #482 opened 2 months ago by cwoodside1278
  1

• Joanthon- Ask about new SOW for upcoming year

  #481 opened 2 months ago by cwoodside1278
  1

• update the data selection protocols

  #484 opened 2 months ago by cwoodside1278
  1

• Christie - Create new tables for HIVE3 outputs

  #478 opened 2 months ago by cwoodside1278
  1

• API Link for GISAID into HIVE3

  #449 opened 6 months ago by cwoodside1278
  5

• Christie - Write a page for the paper that will discuss why I chose the samples I did

  #480 opened 2 months ago by cwoodside1278
  0

• Check the ARGOS Contract for Close-Out

  #472 opened 2 months ago by cwoodside1278
  1

• Christie - Revise the paper with only successful computations

  #477 opened 3 months ago by cwoodside1278
  0

• Video tutorial for single computations for the FDA

  #467 opened 4 months ago by cwoodside1278
  2

• Remove any mention About resubmission to the NCBI bioproject

  #475 opened 3 months ago by cwoodside1278
  1

• Christie - verify QC attribute count before publishing

  #469 opened 3 months ago by cwoodside1278
  1

• Data Dictionary v1.6 pushed to ARGOS

  #468 opened 3 months ago by cwoodside1278
  1

• Add representative_genome column to the assemblyQC.tsv

  #464 opened 3 months ago by cwoodside1278
  1

• Update the Schema to v1.6

  #459 opened 3 months ago by cwoodside1278
  1

• Christie - Verify the dataset number in the paper before publishing

  #470 opened 3 months ago by cwoodside1278
  1

• Vahan to give QC attribute definitions

  #471 opened 3 months ago by cwoodside1278
  1

• Christie - update figures of the paper

  #463 opened 3 months ago by cwoodside1278
  3

• Christie - Adding/editing a variable to the v1.6 data dictionary

  #457 opened 3 months ago by cwoodside1278
  5

• Update the supplementary tables as the datapushes progress

  #474 opened 3 months ago by cwoodside1278
  0

• Updated the FAQs in the ARGOSDB

  #473 opened 3 months ago by cwoodside1278
  0

• Christie - Video tutorial of how I do HIVE3 pushes.

  #465 opened 4 months ago by cwoodside1278
  1

• Troubleshooting Protocol

  #448 opened 4 months ago by kee007ney
  2

• Add Flu section to the paper

  #455 opened 4 months ago by cwoodside1278
  2

• HIVE3 Good practices document for the FDA

  #466 opened 4 months ago by cwoodside1278
  1

• Make an Onboarding Doc/Folder for ARGOS specifically

  #450 opened 4 months ago by cwoodside1278
  1

• Make a README file for the code that was added to the repo

  #462 opened 4 months ago by cwoodside1278
  1

• Emma - draft HIVE3 protocol for the NCBI BioProject computations

  #461 opened 4 months ago by cwoodside1278
  3

• H5N1 flu strain selection for QC

  #453 opened 6 months ago by cwoodside1278
  2

• Christie - Make updates to the paper per Jingyue's comments

  #456 opened 5 months ago by cwoodside1278
  3

• Python script for HIVE3 json to tsv conversions

  #452 opened 5 months ago by cwoodside1278
  1

• Tutorial for FDA in HIVE3 computations.

  #458 opened 5 months ago by cwoodside1278
  2

• Verify the phred quality for HIVE2/3

  #441 opened 6 months ago by cwoodside1278
  2

• Xinyang's graphs for the FDA Meeting????

  #447 opened 6 months ago by cwoodside1278
  1

• Robel - Check dataset sanity python script needs to be updated

  #451 opened 6 months ago by cwoodside1278
  1

• Change log for the latest data push

  #454 opened 6 months ago by cwoodside1278
  0

• HIVE3 error about 'failed to submit loading process'

  #443 opened 6 months ago by cwoodside1278
  1

• Create June GitHub Task List

  #445 opened 6 months ago by cwoodside1278
  1

• Watch video of data push to understand

  #442 opened 6 months ago by cwoodside1278
  1

• Christie - Onboarding for Reilan

  #440 opened 6 months ago by cwoodside1278
  2

• May FDA Meeting

  #444 opened 6 months ago by cwoodside1278
  1

• Christie - H5N1 information for the May FDA Meeting

  #446 opened 6 months ago by cwoodside1278
  1

• Christie- Biocompute poster for conference

  #439 opened 6 months ago by cwoodside1278
  1

• christie - "no reference genome" HIVE3 issue

  #438 opened 7 months ago by cwoodside1278
  2