Pinned Repositories
CS-PRS-pipeline
PRS pipeline using PRS_CS
finemapping-pipeline
Statistical fine-mapping pipeline in FinnGen
finngen-documentation
https://finngen.gitbook.io/documentation: FinnGen documentation for public releases
ld_server
Serve linkage disequilibrium
LDSC
META_ANALYSIS
Tools for doing x way meta-analysis
pheweb
A tool to build multi-phenotype GWAS browsers
qc_imputation
Genotype QC and imputation pipeline
regenie-pipelines
WDL pipelines for running regenie
saige-pipelines
FINNGEN's Repositories
FINNGEN/CS-PRS-pipeline
PRS pipeline using PRS_CS
FINNGEN/regenie-pipelines
WDL pipelines for running regenie
FINNGEN/META_ANALYSIS
Tools for doing x way meta-analysis
FINNGEN/pheweb
A tool to build multi-phenotype GWAS browsers
FINNGEN/finngen-documentation
https://finngen.gitbook.io/documentation: FinnGen documentation for public releases
FINNGEN/FinnGenUtilsR
FinnGenUtilsR
FINNGEN/LDSC
FINNGEN/CohortOperationsShinyApp
CohortOperationsShinyApp
FINNGEN/commons
Workflows for FINNGEN data munging
FINNGEN/genotype_browser
FinnGen genotype browser pilot
FINNGEN/lavaa-react
lavaa-react
FINNGEN/pca_kinship
PCA & Kinship pipeline
FINNGEN/autoreporting
FINNGEN/CohortOperations2
FINNGEN/CohortOperationsViewer
FINNGEN/DatabaseConnector
FINNGEN/LifeTrack
LifeTrack: a visualization tool for electronic health records (EHRs)
FINNGEN/mmpio
Convert summary stats to input for MMP
FINNGEN/Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
FINNGEN/billing-report
Generate monthly billing report for FIMM projects
FINNGEN/CromwellInteract
FINNGEN/ETL
second version for the ETL of the detailed longitudinal data to the OMOP-CDM
FINNGEN/exome_scripts
Pipeline to deal with exome data
FINNGEN/HadesExtras
HadesExtras
FINNGEN/kanta_lab_omop_qc
FINNGEN/kanta_lab_preprocessing
Repo for kanta lab QC
FINNGEN/LOFanalysis
Pipeline to return Gene/Sample LOF matrix
FINNGEN/LongitudinalDummyDataGenerator
FINNGEN/pheweb-users-input-validator
FINNGEN/volcano_plot
Volcano plot (aka LAVAA/Fauman plot)