Fantasque68

Fantasque68's Stars

• ShobiStassen/VIA

  trajectory inference

  Language:Jupyter Notebook9421

• mortazavilab/PyWGCNA

  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

  Language:Jupyter Notebook23056

• digitalcytometry/cytotrace2

  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.

  Language:R1118

• SuperBianC/scMulan

  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

  Language:Jupyter Notebook557

• saezlab/decoupler-py

  Python package to perform enrichment analysis from omics data.

  Language:Python17626

• GeostatsGuy/GeoDataSets

  Synthetic datasets for geoscience (geo)statistical modeling

  93119

• pyecharts/pyecharts

  🎨 Python Echarts Plotting Library

  Language:Python15.1k2.9k

• massgravel/Microsoft-Activation-Scripts

  Open-source Windows and Office activator featuring HWID, Ohook, KMS38, and Online KMS activation methods, along with advanced troubleshooting.

  Language:Batchfile112k10.8k

• axelalmet/flowsig

  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.

  Language:Python651

• zdebruine/RcppML

  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

  Language:C++10317

• jinworks/CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

  Language:R32855

• yoyolicoris/pytorch-NMF

  A pytorch package for non-negative matrix factorization.

  Language:Python23423

• kojikoji/deepcolor

  Language:Jupyter Notebook105

• Winnie09/GPTCelltype

  Language:HTML17632

• DaoCloud/public-image-mirror

  很多镜像都在国外。比如 gcr 。国内下载很慢，需要加速。致力于提供连接全世界的稳定可靠安全的容器镜像服务。

  Language:Shell7.9k1k

• Marsilea-viz/marsilea

  Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

  Language:Python2279

• cellgeni/schard

  reticulate-free single cell format conversion

  Language:R1095

• scverse/rapids_singlecell

  Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

  Language:Python16523

• kharchenkolab/pagoda2

  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

  Language:JavaScript22047

• carmonalab/UCell

  Gene set scoring for single-cell data

  Language:R14217

• tctianchi/pyvenn

  2 ~ 6 sets venn diagram for python

  Language:Python323119

• yohann84L/plot_metric

  Python package to simplify plotting of metric like ROC curve, confusion matrix etc..

  Language:Python7010

• bokeh/bokeh

  Interactive Data Visualization in the browser, from Python

  Language:TypeScript19.5k4.2k

• DingWB/PyComplexHeatmap

  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

  Language:Python30332

• YosefLab/Hotspot

  Language:Python9714

• saezlab/liana-py

  LIANA+: an all-in-one framework for cell-cell communication

  Language:Python17722

• digitalcytometry/cytospace

  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data

  Language:Python11919

• KlugerLab/GeneTrajectory-python

  Python implementation of Gene Trajectory

  Language:Jupyter Notebook242

• BiomedicalMachineLearning/stLearn

  A novel machine learning pipeline to analyse spatial transcriptomics data

  Language:Python20828

• BayraktarLab/cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python32658