Chado
Chado related code for FlyBase
Scripts
Statistics
data_class_counts.pl - A script for calculating counts of FlyBase data classes for a release.
merge_chado_alliance_gene_summary_counts.py - A script for calculating counts of various types of gene summaries by gene.
gene_summary_stats.sql - SQL used for generating gene summary counts from Chado
Pathways and metabolism
extend_ec_data.pl - A script for pulling in Enzyme metadata and adding it to EC dbxref entries in Chado.
Misc
A script for extracting genes with sparse GO annotations and which are highly conserved across many species.
Schema
Utility functions
IDs - FlyBase ID related functions for Chado.