Pinned Repositories
bulkfile-scripts
Scripts useful for working with bulk FlyBase data locally.
chado
Chado related code for FlyBase
drosophila-anatomy-developmental-ontology
The home of the Drosophila anatomy ontology
drosophila-developmental-ontology
The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.
drosophila-phenotype-ontology
The home of the Drosophila phenotype ontology
email-extraction
A script for extracting email addresses from PDF files
flybase-controlled-vocabulary
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
react-ontology-ribbon
A React component for generating a heatmap type display for GO slims.
react-sequence-viewer
A React wrapper around the BioJS sequence-viewer component
topoview
FlyBase TopoView glyph for GBrowse 2.x
FlyBase's Repositories
FlyBase/drosophila-anatomy-developmental-ontology
The home of the Drosophila anatomy ontology
FlyBase/flybase-controlled-vocabulary
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
FlyBase/react-sequence-viewer
A React wrapper around the BioJS sequence-viewer component
FlyBase/react-ontology-ribbon
A React component for generating a heatmap type display for GO slims.
FlyBase/drosophila-developmental-ontology
The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.
FlyBase/drosophila-phenotype-ontology
The home of the Drosophila phenotype ontology
FlyBase/biocurator-assistant
A Python-based script for processing scientific article data via GPT-4.
FlyBase/bulkfile-scripts
Scripts useful for working with bulk FlyBase data locally.
FlyBase/react-alignment-graphic
A React component for generating an overview image of BLAST results.
FlyBase/harvdev-proforma-testdb
Repository for creation and loading of the proforma test database.
FlyBase/harvdev-utils
Common Python functions used by FlyBase developers at Harvard.
FlyBase/fast-track-your-paper
A tool for expediting curation of published research in genetic databases.
FlyBase/harvdev-gene-identifier
FlyBase/alliance-linkml-flybase
Code for export of FlyBase data to the Alliance LinkML-based persistent store.
FlyBase/chado
Chado related code for FlyBase
FlyBase/harvdev-bulk-reports
Generate bulk reports for FlyBase curators, users and collaborators.
FlyBase/harvdev-docker
Docker base image for Harvdev applications.
FlyBase/harvdev-peeves-parser
Stripped down peeves for testing ONLY. May be destroyed later. To run on tests to get idea of peeves messages.
FlyBase/harvdev-perl-proforma-parser
Perl proforma parsing code
FlyBase/alliance-file-browser
A repository with a self-contained MongoDB and Mongo Express database viewer for viewing files submitted to the Alliance.
FlyBase/blast-db-configuration
Code for generating the Alliance BLAST DB configuration file
FlyBase/CentOS6
A repository to compile a Docker image of a CentOS6 operating sytsem.
FlyBase/component-library
WIP: Test for centralized FB components
FlyBase/flybase-component-library
FlyBase/flybase-ontology-scripts
Scripts for working with FlyBase ontologies, currently mostly for report generation.
FlyBase/flybase-robot-plugin
A ROBOT plugin for the ontology pipelines at FlyBase
FlyBase/flybase.github.io
FlyBase - github.io http://flybase.github.io
FlyBase/fuzzy-onions
Helper scripts for the FlyBase scRNAseq project
FlyBase/graphql-server
FlyBase GraphQL server (alpha)
FlyBase/react-flybase-utils
A collection of simple React components and JS utilitiy functions for FlyBase.