Pinned Repositories
bulkfile-scripts
Scripts useful for working with bulk FlyBase data locally.
chado
Chado related code for FlyBase
drosophila-anatomy-developmental-ontology
The home of the Drosophila anatomy ontology
drosophila-developmental-ontology
The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.
drosophila-phenotype-ontology
The home of the Drosophila phenotype ontology
email-extraction
A script for extracting email addresses from PDF files
flybase-controlled-vocabulary
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
react-ontology-ribbon
A React component for generating a heatmap type display for GO slims.
react-sequence-viewer
A React wrapper around the BioJS sequence-viewer component
topoview
FlyBase TopoView glyph for GBrowse 2.x
FlyBase's Repositories
FlyBase/email-extraction
A script for extracting email addresses from PDF files
FlyBase/topoview
FlyBase TopoView glyph for GBrowse 2.x
FlyBase/dockerfiles
FlyBase Dockerfile repository for various tools
FlyBase/agr_prototype
A Prototype for the Alliance of Genome Resources Web Portal
FlyBase/cytoscape-widget
A React based FlyBase wrapper around Cytoscape for displaying network plots.
FlyBase/react-flybase-datagrid
A react component for displaying tabular data in FlyBase reports.
FlyBase/GO-curation
For projects related to GO curation in FlyBase
FlyBase/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
FlyBase/blast-blat
General use BLAST and BLAT tool for running analyses and displaying results.
FlyBase/gene2function
FlyBase/harvdev-XORT
FlyBase/intermine
A powerful open source data warehouse system
FlyBase/intermine-db
Docker files to setup the InterMine PostgreSQL instance.
FlyBase/intermine-tomcat
FlyBase/python-chado
A Python library for interacting with Chado database
FlyBase/react-bootstrap-table
A Bootstrap table built with React.js
FlyBase/react-bootstrap-table2
Next Generation of react-bootstrap-table
FlyBase/react-csv-downloader
React csv downloader
FlyBase/sequence-viewer
neXtProt protein sequence viewer (javascript) - From SIB CALIPHO group; neXtProt project
FlyBase/sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
FlyBase/wc-ribbon
This repository contains a collection of web components, initially centered on the GO ribbon, a UI tool to visualize a summary of annotations for gene and gene sets.