FlyBase/drosophila-phenotype-ontology

Issues

• obsoletion of 'aging' in GO

  #181 opened 3 months ago by Clare72
  0

• 'aging' is obsolete in GO

  #168 opened a year ago by gouttegd
  0

• obsoletion of GO:0008219 'cell death'

  #162 opened 2 years ago by Clare72
  16

• review 'rate' phenotyes

  #148 opened 2 years ago by Clare72
  3

• Review lethal phenotype patterns

  #14 opened 5 years ago by matentzn
  3

• Increased viability phenotypes

  #147 opened 2 years ago by Clare72
  2

• New terms to use increased/decreased rate

  #142 opened 2 years ago by Clare72
  0

• New 'abnormal' phenotypes

  #144 opened 2 years ago by Clare72
  0

• increased/decreased efficacy of learning

  #145 opened 2 years ago by Clare72
  0

• increased/decreased immune response phenotypes

  #146 opened 2 years ago by Clare72
  1

• Remove object property details from fbdv_extension

  #150 opened 2 years ago by Clare72
  3

• change 'abnormal flight' to 'abnormal flight behavior'

  #143 opened 2 years ago by Clare72
  9

• edit 'abnormal oviposition'

  #132 opened 2 years ago by Clare72
  0

• Unpatternised terms

  #116 opened 3 years ago by Clare72
  0

• Switch to using new upheno pattern for 'hyperplasia'

  #133 opened 2 years ago by Clare72
  0

• Revert QC level to full force when PCO import is fixed

  #63 opened 2 years ago by matentzn
  1

• If release pipeline is set up on new machine mirrors/imports need to be present

  #32 opened 2 years ago by matentzn
  1

• phenotypes for increased/decreased memory

  #102 opened 3 years ago by Clare72
  2

• Hyperplasia logical def

  #114 opened 3 years ago by Clare72
  0

• Circadian rhythm/behavior phenotypes

  #113 opened 3 years ago by Clare72
  0

• Sleep phenotypes

  #101 opened 3 years ago by Clare72
  3

• minor inconsistencies in the fertile-sterile FBcv term definitions

  #108 opened 3 years ago by arzuozturk
  5

• We should move `developmental rate defective` to the abnormalProcess pattern

  #22 opened 3 years ago by matentzn
  8

• Create patterns for normal and abnormal fertility

  #24 opened 5 years ago by matentzn
  1

• add missing namespace to new phenotypic class terms

  #106 opened 3 years ago by gm119
  2

• 3 FBcv terms are missing 'phenotypic_class' namespace

  #107 opened 3 years ago by gm119
  2

• Review DPO EQ defs and assign to uPheno patterns

  #13 opened 5 years ago by matentzn
  9

• Assign dpoAbnormalAnatomicalEntityByQuality to uPheno patterns

  #28 opened 5 years ago by matentzn
  2

• dpoIItowards.tsv instances should be moved to abnormallyIncreasedNumberOfAnatomicalEntity

  #23 opened 4 years ago by matentzn
  2

• Investigate problem with upper level equivalences

  #39 opened 5 years ago by matentzn
  5

• new phenotypes for Abnormally Increased/Decreased Rate Of Behavior patterns

  #75 opened 4 years ago by Clare72
  0

• Cancer phenotypes

  #72 opened 4 years ago by vmt25
  0

• new phenotypes for Abnormally Increased/Decreased Rate Of Biological Process patterns

  #76 opened 4 years ago by Clare72
  0

• additional size and weight phenotypes

  #77 opened 4 years ago by Clare72
  0

• abnormal memory subclasses

  #78 opened 4 years ago by Clare72
  0

• Obsolete endo/exo-cytosis phenotypes

  #79 opened 4 years ago by Clare72
  0

• defective to abnormal in phenotype names

  #53 opened 4 years ago by Clare72
  0

• has participant property comes in the wrong way

  #69 opened 4 years ago by matentzn
  0

• dpoAbnormalRateOfDevelopmentBeforeStage.yaml is missing

  #64 opened 4 years ago by matentzn
  1

• Creating abnormalAnatomicalEntity phenotypes from FBBT for downstream tools

  #15 opened 5 years ago by matentzn
  6

• Rename 'thermotaxis behavior defective'

  #27 opened 5 years ago by Clare72
  0

• Behaviors for FlyBowl phenotyes

  #56 opened 5 years ago by Clare72
  0

• dpoAbnormalBiologicalProcessByQuality needs to be assigned to uPheno patterns

  #29 opened 5 years ago by matentzn
  1

• Add dosumis as contributor to repo

  #42 opened 5 years ago by matentzn
  3

• Create first official github release and change purl config

  #25 opened 5 years ago by Clare72
  2

• Consider importing the Janelia CV for phenotype

  #41 opened 5 years ago by matentzn
  0

• Behavioral phenotypes & patterns

  #35 opened 5 years ago by matentzn
  0

• Change phenotype to abnormal phenotype

  #21 opened 5 years ago by matentzn
  1

• Add xrefs of classes that were source for the definition to the definition?

  #16 opened 5 years ago by matentzn
  3

• Example of dbxref on EQ/human readable def?

  #20 opened 5 years ago by matentzn
  10