Issues
- 7
- 0
methylize diff_meth_regions throwing an error
#131 opened by harshaa10 - 0
- 0
Any groups for exchange?
#129 opened by Shahin-rmz - 0
- 0
- 0
copy number
#119 opened by AntoniaGocke - 1
- 0
save_control only works with single batches
#51 opened by marcmaxson - 0
methylprep.read_geo exceptions
#57 opened by marcmaxson - 1
download support TAR of BED files too
#90 opened by marcmaxson - 2
offer Apache Arrow output option in methylprep.run_pipeline -- ideal for GPU machine learning use case
#69 opened by marcmaxson - 0
How to control filtering in command line
#116 opened by rowanhowellGE - 3
Manifest
#101 opened by stefdecondor31 - 1
Control of output file location/names
#104 opened by paulaberry - 0
Adapting sample_sheets.py to Windows users
#110 opened by f-marchi - 0
Accessing probe intensities for QC metrics
#102 opened by notmaurox - 0
CLI does not import the right module
#100 opened by lbeltrame - 0
- 3
- 2
poobah pkl file is not generated
#59 opened by moranr7 - 1
run_pipeline(); change default behavior to return None instead of list of data_containers/beta_values to save memory.
#62 opened by marcmaxson - 1
missing data in manifest files for non-CpG probes; FIX requires users to delete their local manifest files and methylprep will redownload them.
#41 opened by marcmaxson - 3
- 0
- 1
- 1
load_processed function: enable it to create dataframe of betas from processed csvs
#43 opened by marcmaxson - 1
Add download command example in the README
#44 opened by haa-gg - 1
GEO downloader doesn't handle "TAR (of TXT)" of files, only "TAR (of IDAT)" files.
#36 opened by marcmaxson - 2
- 2
sample_sheet parser forces Sample_Name(s) exist and are unique; will cause name-mismatches in methylcheck.
#27 opened by marcmaxson - 1
- 0
- 1
Need 27k sample for unit testing
#3 opened by marcmaxson