FrancescoVit

FrancescoVit's Stars

• cidgoh/DataHarmonizer

  A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.

  Language:JavaScript9426

• NCEAS/codyn

  Community dynamics metrics

  Language:R338

• biocore/emp

  Code repository of the Earth Microbiome Project.

  Language:Jupyter Notebook15668

• OBOAcademy/obook

  OBO Organized Knowledge: Training materials for becoming an OBO engineer

  Language:Makefile9238

• nearinj/Comparison_of_DA_microbiome_methods

  Language:R5320

• panovp/FNS-Harmony

  Application ontology for the FNS-Cloud project. Food Nutrition Security Cloud (FNS-Cloud) has received funding from the European Union’s Horizon 2020 Research and Innovation programme (H2020-EU.3.2.2.3. – sustainable and competitive agri-food industry) under Grant Agreement No. 863059.

  2

• FoodOntology/joint-food-ontology-wg

  This is a repository for documents and issues related to the development of interoperable food related ontologies.

  223

• ontodev/robot

  ROBOT is an OBO Tool

  Language:Java25973

• krisrs1128/multitable_review

  Code to accompany "Multitable Methods for Microbiome Data Integration"

  Language:R93

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  712162

• kevinblighe/EnhancedVolcano

  Publication-ready volcano plots with enhanced colouring and labeling

  Language:R40381

• alk224/akutils-v1.2

  akutils with massive updates over v1.1 to functionality and command line interface.

  Language:Shell158

• microbiome/microbiome

  microbiome R package

  Language:R28654

• EmilHvitfeldt/r-color-palettes

  Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

  Language:R1.5k136

• Lagkouvardos/Rhea

  A set of R scripts for the analysis of microbial profiles

  Language:R4014

• EbookFoundation/free-programming-books

  :books: Freely available programming books

  335k61.3k

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k622

• LangilleLab/microbiome_helper

  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

  Language:Python433205