Issues
- 2
CRAN 2.0.0 Release
#145 opened by jalavery - 3
Add NSCLC v3.1-consortium
#137 opened by hfuchs5 - 5
Change in name and structure from fusions dataset --> structural variant dataset
#111 opened by slb2240 - 1
cBio officially now uses sv instead of fusion
#138 opened by hfuchs5 - 0
synapse PAT access
#119 opened by alexpaynter - 3
To update at each data release
#13 opened by slb2240 - 0
Hackathon - Spring 2024
#135 opened by jalavery - 0
Update pull_data_synapse() to not be case sensitive
#120 opened by jalavery - 0
Update `synapse_version` to return one row per cohort with most recent release (if most_recent = TRUE)
#128 opened by jalavery - 0
Update drug regimen list dataset to automatically pull drug lists based on most recent = TRUE
#132 opened by jalavery - 2
- 0
CRAN v1.1.1 Release
#133 opened by jalavery - 1
Add tests for each data release
#56 opened by jalavery - 1
- 8
Error with pull_data_synapse()
#118 opened by andreasmeid - 0
- 0
- 0
Add test for version number / date modified changing
#123 opened by jalavery - 2
Automate Pulling Synapse IDs
#106 opened by jalavery - 5
- 1
cBioPortal vs Synapse Genomic Data Discrepancies
#92 opened by jalavery - 0
Add ref to bioinformatics paper to pagedown
#110 opened by jalavery - 0
Add publications to README
#96 opened by slb2240 - 2
Update pull data synapse vignette
#100 opened by jalavery - 0
Update synapser instructions
#105 opened by jalavery - 2
Incorporate gnomeR into select unique ngs
#102 opened by jalavery - 1
CRAN Release V1.0.2
#97 opened by jalavery - 0
`git push`
#98 opened by jalavery - 1
Add Links to Publications in README
#87 opened by jalavery - 2
Deprecate `fetch_samples()`?
#91 opened by jalavery - 1
NA strings in CNA file
#88 opened by jalavery - 0
CRAN Release 1.0.1
#85 opened by jalavery - 0
Update select_unique_ngs() to get unique NGS reports at the dx level as opposed to the pt level
#84 opened by jalavery - 2
- 1
Improve error messaging in `create_analytic_cohort()` and `select_unique_ngs()`
#57 opened by jalavery - 2
- 0
Update selecting functions
#83 opened by jalavery - 1
Look into preventing curl timeout in API requests in `pull_data_synapse()`
#68 opened by karissawhiting - 0
Update NAs from synapse csv files
#73 opened by jalavery - 0
Update installation instructions on README
#72 opened by jalavery - 1
Add CRAN badge to README
#69 opened by karissawhiting - 1
Investigate color changes for the sunburst plot
#71 opened by jalavery - 2
Create a GitHub release of current CRAN version (v1.0.0). before we make changes for next version
#70 opened by karissawhiting - 3
Release genieBPC version 1.0
#61 opened by jalavery - 0
we don't need TramineR
#50 opened by michaelcurry1123 - 1
synapse_version() can't tell the difference between public and consortium versions when most_recent = TRUE
#42 opened by michaelcurry1123 - 1
- 1
{synapser} dependency
#34 opened by jalavery - 2
- 0