Pinned Repositories
gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
book-club
Supporting materials for stats/coding book-club
broom
Convert statistical analysis objects from R into tidy format
cbioportalR
R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
cureit
oncokbR
Annotate mutation, copy number alteration and structural variant data in R using oncoKB Annotation API
tables-in-rmd
An (opinionated) review of packages to make tables in Rmd. Compares popular R table making packages including {gt}, {huxtable} and {flextable} and discusses pros and cons with examples.
togglvis
A package that wraps the {togglr} API to make basic visualizations using {ggplot} for progress reports and time-tracking
gnomeR
Package to wrangle and visualize genomic data in R
karissawhiting's Repositories
karissawhiting/cbioportalR
R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
karissawhiting/oncokbR
Annotate mutation, copy number alteration and structural variant data in R using oncoKB Annotation API
karissawhiting/cureit
karissawhiting/tables-in-rmd
An (opinionated) review of packages to make tables in Rmd. Compares popular R table making packages including {gt}, {huxtable} and {flextable} and discusses pros and cons with examples.
karissawhiting/cbioportal
cBioPortal for Cancer Genomics
karissawhiting/clinfun
Utilities to make your clinical collaborations easier if not fun.
karissawhiting/clinical-reporting-gtsummary-rmed
Clinical Reporting with {gtsummary}
karissawhiting/codelets
karissawhiting/coronavirus-data
This repository contains data on Coronavirus Disease 2019 (COVID-19) in New York City (NYC), from the NYC Department of Health and Mental Hygiene.
karissawhiting/diabetes-case-study
karissawhiting/education.rstudio.com
karissawhiting/genieBPC
Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data
karissawhiting/ggoncoprint
karissawhiting/gtreg
Regulatory Tables for Clinical Research
karissawhiting/gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
karissawhiting/http-testing
HTTP testing for R
karissawhiting/intro-to-biostatr
Presentation about the MSK biostatR umbrella package
karissawhiting/karissawhiting.github.io
my website
karissawhiting/kwiktools
function dumpster
karissawhiting/qsure-case-study
Case study for teaching data cleaning, processing and modeling in R
karissawhiting/qsure-r-training-2021
training materials for 2021 QSURE fellows
karissawhiting/qsure-r-training-2022
Materials for Intro to R Training Courses
karissawhiting/qsure-r-training-2023
An introduction to R programming for statistical Analyses
karissawhiting/qsure-r-training-2024
karissawhiting/quarto-web
Quarto website
karissawhiting/r-medicine-genie-gnomer
karissawhiting/reproducibility-in-r
karissawhiting/rmedicine-gtsummary
R/Medicine 2020: Reproducible Research using the {gtsummary} package
karissawhiting/rockthemes
R colour palettes based on classic rock albums and some other ones
karissawhiting/tidycmprsk