Issues
- 0
`.select_to_varnames()` and `.formula_list_to_named_list()` to be deprecated
#348 opened by ddsjoberg - 0
Add `summarize_by_patient()` function
#345 opened by karissawhiting - 0
Add function to extract patient ID from sample ID
#331 opened by karissawhiting - 3
- 0
add unit testing for `add_point_mut()`
#343 opened by hfuchs5 - 2
Add an example to vignette and/or docs that changes color palette of the ggcor or ggcomut plot
#257 opened by hfuchs5 - 0
- 1
unit testing for tbl_genomic(..., wide = T) needed
#337 opened by hfuchs5 - 0
- 0
Update Docs to make sure new SV is canon-cbio has deprecated fusion files for sv
#338 opened by hfuchs5 - 16
Create text binary matrix which retains specific mutation type in matrix
#263 opened by karissawhiting - 6
gene_binary duplicated IDs
#294 opened by jflynn264 - 4
Minor bugs in `create_gene_binary()`
#293 opened by akriti21 - 0
Large datasets (1,000s of patients) takes a long time in `summarize_by_gene()`
#329 opened by hfuchs5 - 0
variant_classification error messaging
#302 opened by jalavery - 0
- 0
Allow users to select specific genes in ggcor (or add example of preselecting genes)
#255 opened by hfuchs5 - 0
Add `other_vars` arg to `add_pathways`
#325 opened by karissawhiting - 0
Create a vignette for copy number data
#258 opened by hfuchs5 - 0
- 0
downsize number of datasets
#282 opened by hfuchs5 - 1
- 1
- 0
- 0
Pathways bug
#315 opened by karissawhiting - 2
- 1
Wrong columns in error message
#314 opened by karissawhiting - 1
- 1
- 1
Warning message from summarize_by_gene()
#310 opened by karissawhiting - 1
Sample_ID not recognized as valid column name
#313 opened by karissawhiting - 2
adding panels for GENIE specifications
#319 opened by hfuchs5 - 1
- 1
- 3
count_pathways_by() has confusing documentation and functionality regarding gene level vs. alt level
#251 opened by hfuchs5 - 2
Add subset_by_panel() function
#273 opened by karissawhiting - 4
- 1
Improve documentation and color defaults for ggcomut
#256 opened by hfuchs5 - 2
Investigate genes with hyphen in their names. Are they 3 genes fused together?
#246 opened by hfuchs5 - 1
dark theme R messages are hard to read
#242 opened by hfuchs5 - 6
tbl_genomic: freq_cutoff issue
#253 opened by hfuchs5 - 1
- 5
summarize_by_gene VERY slow
#259 opened by hfuchs5 - 0
- 1
reference page for pathways() needs updating
#249 opened by hfuchs5 - 1
- 1
create_gene_binary: confusing documentation
#252 opened by hfuchs5 - 1
vignette edits needed
#254 opened by hfuchs5 - 1
- 0
test issue
#247 opened by carokos