/Candida_nextPARS

Primary LanguagePython

Candida_nextPARS

How to use these scripts (scripts directory)

Usage stem-loop_predictor_public.py

python stem-loop_predictor_public.py -i=miRNAs.fold -s=25 -m=10 -ms 6

Usage get_long_range_interactions.py

python get_long_range_interactions.py

Here are the nextPARS score for all mRNAs in 4 candida species and saccharomyces

nextPARS_score/c_albicans nextPARS_score/c_glabrata nextPARS_score/c_parapsilosis nextPARS_score/c_saccharomyces nextPARS_score/c_tropicalis