Gabaldon lab

Github repository of Gabaldon lab

Barcelona

Pinned Repositories

Candida_Selection_DrugResistance
Language:Python4 2 02
crossmapper
Crossmapper software
Language:Python9 6 61
EvolClust
Evolcust retrieves groups of genes that appear clustered together in groups of species
Language:Python15 4 34
haplotypo
This is the Haplotypo repository
Language:Python20 8 56
jloh
A tool to extract LOH blocks from VCF, BAM and FASTA data
Language:Python21 4 112
lncRNAs
script of lncRNA project
Language:R5 1 05
markers_genes
An automated pipeline for the identification of phylogenetically informative marker genes given as output a number of proteomes
Language:Python8 4 00
perSVade
perSVade: personalized Structural Variation detection
Language:Python37 7 205
phylomizer
PhylomeDB automated pipeline for reconstructing high-quality phylogenetic tree
Language:Python7 5 174
redundans
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Language:C++134 8 10620

Gabaldon lab's Repositories

Gabaldonlab/redundans
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Language:C++134 8 10620
Gabaldonlab/perSVade
perSVade: personalized Structural Variation detection
Language:Python37 7 205
Gabaldonlab/jloh
A tool to extract LOH blocks from VCF, BAM and FASTA data
Language:Python21 4 112
Gabaldonlab/haplotypo
This is the Haplotypo repository
Language:Python20 8 56
Gabaldonlab/EvolClust
Evolcust retrieves groups of genes that appear clustered together in groups of species
Language:Python15 4 34
Gabaldonlab/crossmapper
Crossmapper software
Language:Python9 6 61
Gabaldonlab/Candida_Selection_DrugResistance
Language:Python4 2 02
Gabaldonlab/karyon
This is the Karyon Pipeline
Language:Python3 5 41
Gabaldonlab/longHam
LongHam assembly pipeline
Language:Python1 4 00
Gabaldonlab/ghost_transfers
Language:R0 0 01
Gabaldonlab/nextPARS
Language:Python0 5 00
Gabaldonlab/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell6 0
Gabaldonlab/C_albicans_with_albumin
Language:R4 0
Gabaldonlab/Candida_nextPARS
Language:Python3 0
Gabaldonlab/Cglabrata_tradeoffs
Language:Python
Gabaldonlab/crosslink-by-sequence
A tool to crosslink proteins between two proteomes from different sources using their sequences, aiming to avoid the inaccuracies associated with source-specific IDs.
Language:Python
Gabaldonlab/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Language:Python1 0
Gabaldonlab/FastaIndex
FastA indexing and sequence retrival.
Language:Python1 0
Gabaldonlab/hgt_detection
Language:Python0 0
Gabaldonlab/how2code
Technical seminar regarding good practices in writing code and documentation
Language:Python2 0
Gabaldonlab/intermine
Stable version of intermine used by candidamine and modified by us
Language:Java0 0
Gabaldonlab/last
"Fork" of LAST (https://gitlab.com/mcfrith/last) v1418
Language:C++1 0
Gabaldonlab/last_v800
LAST finds similar regions between sequences.
Language:C++1 0
Gabaldonlab/lung_microbiome_16S
Language:R
Gabaldonlab/phylogenetic-reconstruction-for-hybrids
Language:Python
Gabaldonlab/phylomedb_speciestree
Language:Python0 0
Gabaldonlab/pyScaf
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
Language:Python1 0
Gabaldonlab/Q-PHAST
Language:Python2 01
Gabaldonlab/reconciler
Language:Python0 0
Gabaldonlab/structural_phylome
Compute a sequence and structure based phylome based on uniprot proteomes.
Language:Python3 0