Gabaldonlab/redundans

Issues

• Error in Platanus assembly?

  #111 opened 23 days ago by sanalbert
  0

• Which file is the final Homozygous chromosomes file?

  #110 opened a month ago by maruiqi0710
  0

• Different outputs

  #109 opened 7 months ago by tamsinlh
  2

• TypeError: reduce() of empty iterable with no initial value

  #105 opened 9 months ago by ZhouTaoWang
  7

• fasta2homozygous.py make my contig file empty

  #106 opened a year ago by HouYan20
  2

• Gap closing error

  #107 opened a year ago by maxmaronna
  2

• Conda install issue

  #108 opened a year ago by ALongmuir12
  1

• GFAstats error

  #100 opened a year ago by aabaricalla
  3

• conda install error

  #103 opened a year ago by maxmaronna
  6

• Question about scaffolding / gap closing

  #101 opened a year ago by SaelinB
  5

• Docker/singularity container

  #99 opened a year ago by aabaricalla
  2

• [ERROR] Empty FastA file encountered:

  #91 opened a year ago by mgarl-10
  2

• OSError: [Errno 8] Exec format error

  #95 opened a year ago by BioHlT
  3

• Increase the usage of combined assignment operators

  #90 opened 2 years ago by elfring
  1

• Gapcloser step no multithread

  #94 opened 2 years ago by aabaricalla
  2

• RuntimeError: maximum recursion depth exceeded

  #88 opened 2 years ago by JonEilers
  1

• redundant running too long time

  #96 opened 2 years ago by zhang144999
  3

• SSPACE_Standard_v3.0.pl run failed with Can't open bwa output -- fatal

  #97 opened 2 years ago by NailouZhang
  2

• scaffolding options

  #87 opened 2 years ago by bishopia
  1

• Problem on performance

  #89 opened 2 years ago by Hai1983
  1

• Where is the `fasta2diverged.py` script?

  #92 opened 2 years ago by MatteoSchiavinato
  1

• How to use redundans in any path

  #93 opened 2 years ago by HuangseYuanli
  0

• Is it possible to get a gfa

  #72 opened 3 years ago
  1

• Change of tmp default folder

  #85 opened 3 years ago by marco91sol
  1

• Confusing or misleading run text

  #86 opened 3 years ago by pdimens
  1

• Redundans hanging on scaffold.longread stage

  #60 opened 3 years ago by ens-LCampbell
  9

• Reduction step "reduces" 90% of the assembly

  #62 opened 3 years ago by SvitlanaLukicheva
  8

• Assembly correction

  #84 opened 4 years ago by mamtamasand
  2

• why -i fq is required？

  #83 opened 4 years ago by rainjy
  1

• Fixing assembly with polar_star

  #57 opened 4 years ago by mictadlo
  1

• redundancy reduction step alternative

  #58 opened 4 years ago by mictadlo
  2

• Redundans frozen in final reduction step for 9 days with no more output

  #82 opened 4 years ago by stupornova33
  4

• IOError: [Errno 28] No space left on device

  #69 opened 4 years ago by AMMMachado
  2

• v0.13 version download

  #71 opened 4 years ago by forrwill
  2

• gap closing only with PacBio reads

  #56 opened 4 years ago by mictadlo
  1

• Scaffolding with long reads fails

  #73 opened 4 years ago by hkrzystek
  2

• ImportError After Launching

  #74 opened 4 years ago by floutt
  1

• OSError: [Errno 20] Not a directory

  #76 opened 4 years ago by Kata-Pa
  1

• OSError: [Errno 8] Exec format error

  #77 opened 4 years ago by emmannaemeka
  1

• Redundans won't start

  #78 opened 4 years ago by jahneldardavik
  1

• --log file empty, get statistics?

  #80 opened 4 years ago by matryoskina
  1

• reduction step overlap

  #81 opened 4 years ago by LucieGL
  1

• Redundans only uses 1 CPU for lastal, even when setting 32 threads

  #79 opened 5 years ago by charlesfeigin
  0

• OSError: [Errno 17] File exists

  #75 opened 5 years ago by Kata-Pa
  1

• IOError: [Errno 28] No space left on device

  #70 opened 5 years ago by AMMMachado
  0

• Re-ordering contigs vs reference

  #61 opened 6 years ago by joanmarticarreras
  1

• [WARNING] Nothing reduced, but why? Redundans seems to not process the entire fasta file.

  #63 opened 6 years ago by DaniPaulo
  1

• bin/.compile.sh susceptible to symlink attack

  #65 opened 6 years ago by waoki
  1

• INSTALL.sh uses but doesn't set $log

  #66 opened 6 years ago by waoki
  1

• Redundans seems to not be reading input Fasta properly

  #64 opened 6 years ago by DaniPaulo
  1