GabrielHoffman

Statistical genomics

Icahn School of Medicine at Mount Sinai New York

Pinned Repositories

COS_public_release
Public release of code for analysis of RNA-Seq data from COS cohort
Language:HTML6 3 02
crumblr
Count ratio uncertainty modeling base linear regression
Language:R4 3 01
decorate
Differential Epigenetic Correlation Test
Language:R5 3 21
dream_analysis
Simulation and data analysis code for dream paper
Language:HTML10 3 12
dreamlet
Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
Language:HTML20 6 164
dreamlet_analysis
Analysis code and results for dreamlet
Language:R8 3 61
misc_vp
Variance partitioning for logistic regression
Language:HTML3 3 20
remaCor
remaCor: Random effects meta-analysis for correlated test statistics
Language:R2 3 02
tfbsDB
Database of TFBS with HOCOMOCO v11 scored by FIMO
Language:R5 3 00
variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
Language:R57 3 8014

GabrielHoffman's Repositories

GabrielHoffman/variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
Language:R57 3 8014
GabrielHoffman/dreamlet
Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
Language:HTML20 6 164
GabrielHoffman/dreamlet_analysis
Analysis code and results for dreamlet
Language:R8 3 61
GabrielHoffman/decorate
Differential Epigenetic Correlation Test
Language:R5 3 21
GabrielHoffman/crumblr
Count ratio uncertainty modeling base linear regression
Language:R4 3 01
GabrielHoffman/misc_vp
Variance partitioning for logistic regression
Language:HTML3 3 20
GabrielHoffman/remaCor
remaCor: Random effects meta-analysis for correlated test statistics
Language:R2 3 02
GabrielHoffman/crumblr_analysis
Analysis using crumblr
Language:R1 3 00
GabrielHoffman/qtlPlots
Create QTL plots
Language:R1 3 01
GabrielHoffman/vptest
Candidate assignment using variancePartition
1 3 0
GabrielHoffman/zenith
Gene set analysis following differential expression using linear (mixed) modeling with dream
Language:R1 4 12
GabrielHoffman/adjclust
Adjacency-constrained hierarchical clustering of a similarity matrix
Language:R0 2 00
GabrielHoffman/adjClustFast
Fast adjacency clustering
Language:C3 0
GabrielHoffman/CovTools
Statistical Tools for Covariance Analysis
Language:R
GabrielHoffman/decorrelate_analysis
Analysis code for decor relate
Language:R2 0
GabrielHoffman/fastStudentT
Fast implementation to estimate parameters of Student t distribution for large datasets
Language:C++3 0
GabrielHoffman/gabrielhoffman.github.io
Language:HTML3 0
GabrielHoffman/heivr_analysis
Data analysis with heivr package
3 0
GabrielHoffman/hpc_disk_usage
Scripts to add up disk usage
Language:R3 0
GabrielHoffman/imputez
Impute z-statistics for missing tests using observed z-statistics and the correlation matrix between z-statistics
Language:R3 0
GabrielHoffman/lrgpr
Fit a Low Rank Gaussian Process Regression (LRGPR) / Linear Mixed Model (LMM) for large datasets
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GabrielHoffman/microglia_analysis
Language:R
GabrielHoffman/mmQTL
mmQTL
Language:R3 0
GabrielHoffman/muscat
Multi-sample multi-group scRNA-seq analysis tools
Language:R2 0
GabrielHoffman/muscat-comparison
Language:HTML2 0
GabrielHoffman/muscat-comparison_v2
Muscat comparison - v2
Language:R3 0
GabrielHoffman/mvIC
Evaluate BIC for multivariate regression to enable model selection with multiple response variables
Language:R3 2
GabrielHoffman/pinnacle
Gene set analysis accounting for gene-gene correlations
Language:R
GabrielHoffman/vcfppR
The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
Language:C
GabrielHoffman/zellkonverter
Conversion between scRNA-seq objects
Language:R2 0