Pinned Repositories
cogent3
Comparative Genomics Toolkit 3
EnsemblLite
A new approach to obtaining local copies of ensembl data
app_template
A template for creating cogent3 apps
c3test
for testing doc build to GH pages
cogent3
Comparative Genomics Toolkit 3
gav_blog
Blog content of Gavin Huttley
pycogent
PyCogent: Official repository for software and unit tests
scitrack
tib
Topics in bioinformatics
scitrack
library aimed at scientists who want a simple tool to help log research computations
GavinHuttley's Repositories
GavinHuttley/gav_blog
Blog content of Gavin Huttley
GavinHuttley/tib
Topics in bioinformatics
GavinHuttley/pycogent
PyCogent: Official repository for software and unit tests
GavinHuttley/app_template
A template for creating cogent3 apps
GavinHuttley/c3test
for testing doc build to GH pages
GavinHuttley/cogent3
Comparative Genomics Toolkit 3
GavinHuttley/cogent3.github.io
Contents for cogent3.org
GavinHuttley/DemoProject
Initial project using click
GavinHuttley/EnsemblLite
A new approach to obtaining local copies of ensembl data
GavinHuttley/GraphBin
GraphBin: Refined binning of metagenomic contigs using assembly graphs
GavinHuttley/gutils
utilities for biol3157
GavinHuttley/scitrack
GavinHuttley/ConDiGA
🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics
GavinHuttley/gbintk
🌟🧬 GraphBin-Tk: Assembly graph-based metagenomic binning toolkit
GavinHuttley/GraphBin2
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
GavinHuttley/homologsampler
GavinHuttley/jupyter
Jupyter metapackage for installation, docs and chat
GavinHuttley/MetaCoAG
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
GavinHuttley/metaDigitise
Digitising functions in R for extracting data and summary statistics from figures in primary research papers
GavinHuttley/MutationMotif
GavinHuttley/mutationorigin
GavinHuttley/MutVarMS
Quantifying influences on variance in mutation rate
GavinHuttley/nbgrader
A system for assigning and grading notebooks
GavinHuttley/piqtree2
a python library that exposes features from iqtree2 - efficient software for phylogenomic inference
GavinHuttley/rich
Rich is a Python library for rich text and beautiful formatting in the terminal.
GavinHuttley/sphinx-design
A sphinx extension for designing beautiful, screen-size responsive web components.
GavinHuttley/sphinx-navtree
Navigation tree customization for Sphinx
GavinHuttley/termtosvg
Record terminal sessions as SVG animations
GavinHuttley/VStrains
VStrains is a de novo approach for reconstructing strains from viral quasispecies.