cogent3/ensembl_tui

Issues

• investigate process for GitHub action based PyPI releases

  #87 opened 17 days ago by GavinHuttley
  3

• establish whether duckdb is a viable replacement to sqlite

  #150 opened a month ago by GavinHuttley
  0

• alignments command should accept file of genomic coordinates

  #134 opened 2 months ago by GavinHuttley
  0

• MAF files contain duplicated alignment blocks

  #136 opened 2 months ago by GavinHuttley
  1

• alignments should use a directory data store

  #132 opened 2 months ago by GavinHuttley
  0

• create a docker container for installing EnsemblLite

  #82 opened 2 months ago by GavinHuttley
  2

• SMBE workshop tasks

  #109 opened 2 months ago by GavinHuttley
  0

• installed does not show homology data installation

  #130 opened 2 months ago by GavinHuttley
  0

• including repeats in annotation data for querying

  #65 opened 7 months ago by GavinHuttley
  1

• download.cfg paths should be relative

  #79 opened 4 months ago by GavinHuttley
  1

• Restarting install triggers SQL error

  #92 opened 4 months ago by GavinHuttley
  1

• download issue

  #94 opened 4 months ago by GavinHuttley
  2

• Usage on memory limited hardware

  #93 opened 4 months ago by GavinHuttley
  2

• add option to just get homology info to compara section

  #83 opened 4 months ago by GavinHuttley
  1

• Exporting homolog groups issue

  #95 opened 4 months ago by PuningW
  2

• install fails on some systems

  #91 opened 4 months ago by GavinHuttley
  1

• when num CPU is 1, don't use multiprocess

  #98 opened 4 months ago by GavinHuttley
  0

• Initial release on pypi

  #86 opened 5 months ago by GavinHuttley
  0

• DOC: create docs for users

  #85 opened 5 months ago by GavinHuttley
  0

• EnsemblLite roadmap sketch

  #38 opened 9 months ago by GavinHuttley
  0

• ENH: make download experience more robust

  #81 opened 6 months ago by GavinHuttley
  0

• ENH: ability to get summary statistics for Ensembl hosted genomes

  #74 opened 6 months ago by GavinHuttley
  0

• implement reinflating a stored alignment block

  #40 opened 8 months ago by GavinHuttley
  1

• Selecting a slice of an alignment

  #41 opened 8 months ago by GavinHuttley
  2

• Ensembl site-map object

  #9 opened 9 months ago by GavinHuttley
  3

• ENH: cli for downloading latest available species

  #4 opened a year ago by GavinHuttley
  0

• Define a download cfg file

  #1 opened 9 months ago by GavinHuttley
  1

• ENH: cli interface for grabbing the species trees

  #2 opened a year ago by GavinHuttley
  0

• ENH: cli for listing the available whole genome alignments

  #3 opened a year ago by GavinHuttley
  0

• ENH: added completion checkpoint files

  #5 opened a year ago by GavinHuttley
  0

• DEV: decide on the project name

  #6 opened 9 months ago by GavinHuttley
  1

• demo-tui.mp4

  #10 opened a year ago by GavinHuttley
  0