GeneMANIA/genemania

Issues

• Why I can't visit the website of GeneMANIA?

  #207 opened 8 months ago by Y-Isaac
  2

• Export results - in Genemania results panel menu - exports empty file

  #194 opened 8 months ago by risserlin
  2

• Plugin throws exception when importing a new organism

  #204 opened 8 months ago by chrtannus
  2

• Installing Data dialog appears behind the other dialogs

  #206 opened 8 months ago by chrtannus
  1

• GeneMANIA app does not work on 3.4.0

  #108 opened a year ago by chrtannus
  0

• When createSearcher show No indices found, Where can I get it,Please help me

  #203 opened a year ago by xzhou89
  7

• Where can I get the GENEMANIA_LUCENE_INDEX_DIR data,please help me

  #205 opened a year ago by xzhou89
  1

• GeneMANIA website suggestion: database release date + info

  #167 opened 3 years ago by veroniquevoisin
  1

• enhancement idea: be able to filter physical interaction network using a confidence score

  #180 opened 3 years ago by veroniquevoisin
  0

• Export in svg/pdf

  #174 opened 3 years ago by francicco
  4

• genemania app command - add ability to specify attribute groups

  #170 opened 3 years ago by risserlin
  0

• LuceneConnector static initialization order isse

  #166 opened 3 years ago by AdamByerly
  0

• GeneMANIA website: no strong visual difference between query and added genes

  #164 opened 3 years ago by veroniquevoisin
  0

• Maven build fails for plugin on develop, plugin/3.4, plugin/3.3 and master

  #123 opened 4 years ago by philmaweb
  5

• Cytoscape command - add ability to check if genemania is responding

  #160 opened 4 years ago by risserlin
  0

• Problems with running a specific gene list

  #144 opened 5 years ago by RoniHaas
  3

• Genemania Tool is down

  #137 opened 5 years ago by majumderS
  2

• Cyrest command - add ability to get a simple list of organisms installed

  #135 opened 5 years ago by risserlin
  0

• Cyrest command - check for datasets. If no dataset is installed a dialog pops up.

  #134 opened 5 years ago by risserlin
  0

• Network in online GeneMANIA looks different after Cytoscape import

  #133 opened 5 years ago by shraddhapai
  2

• Interpreting and filtering results by score

  #132 opened 5 years ago by Niveda-S
  0

• Genemania Cytoscape app (not local search): feedback from CBW pathway workshop in March 2019

  #131 opened 6 years ago by veroniquevoisin
  2

• Differences in gene name and query term while retrieving genemania network through Cytoscape

  #130 opened 6 years ago by Niveda-S
  0

• Differences in gene name and query term while retrieving genemania network thrrough Cytoscape

  #129 opened 6 years ago by Niveda-S
  2

• Cytoscape plugin of genemania called via command-line times out

  #128 opened 6 years ago by Niveda-S
  0

• create EM from genemania enrichment results

  #127 opened 6 years ago by risserlin
  0

• Rest access to genemania commands would be nice

  #126 opened 6 years ago by risserlin
  0

• network importer can not create new group.

  #125 opened 6 years ago by risserlin
  0

• genemania cytoscape app and command line tools do not recognize GEO soft files

  #124 opened 6 years ago by risserlin
  0

• Refactor website-ui

  #122 opened 6 years ago by maxkfranz
  0

• Hover help tooltips

  #121 opened 6 years ago by maxkfranz
  0

• "Generate link" button

  #120 opened 6 years ago by maxkfranz
  0

• Increase the contrast of the stripes on query genes

  #119 opened 6 years ago by maxkfranz
  0

• Memory Leak

  #118 opened 7 years ago by ksindy
  2

• Graph bounds not updated after layout application

  #106 opened 7 years ago by maxkfranz
  0

• Shortcut keys for viewport

  #116 opened 8 years ago by maxkfranz
  0

• Slider incorrectly set to zero on app init (sometimes)

  #113 opened 8 years ago by maxkfranz
  1

• Update to Cytoscape.js 3.0

  #111 opened 8 years ago by maxkfranz
  2

• Select query networks based on tags

  #115 opened 8 years ago by maxkfranz
  0

• Help pages : list gene ID types accepted

  #114 opened 8 years ago by maxkfranz
  0

• GeneMANIA website: feedback from students CSHL 2017

  #112 opened 8 years ago by veroniquevoisin
  1

• Use new Safari fullscreen/rich-app mode

  #110 opened 8 years ago by maxkfranz
  0

• Convert pages.genemania.org to Github pages

  #109 opened 8 years ago by maxkfranz
  0

• Gene list causes query to fail

  #107 opened 8 years ago by maxkfranz
  0

• Genemania website: feedback from students CBW pathway workshop june 2016

  #102 opened 8 years ago by veroniquevoisin
  0

• GeneMANIA cytoscape app: feedback from students, CBW pathway workshop June 2016

  #103 opened 8 years ago by veroniquevoisin
  0

• Improve error message for no genes

  #104 opened 8 years ago by maxkfranz
  0

• JS refs in /search/organism/gene|gene URL scheme incorrect

  #105 opened 8 years ago by maxkfranz
  0

• GeneMANIA Cytoscape app 3.4.1 : most recent dataset

  #101 opened 8 years ago by veroniquevoisin
  0

• Require prior website-ui building for website WAR

  #100 opened 8 years ago by maxkfranz
  0