Pinned Repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
RS3
A library interfacing libs3 to R
rusqlite
Ergonomic bindings to SQLite for Rust
SEW
SEW
ukb-pret
ultrajson
Ultra fast JSON decoder and encoder written in C with Python bindings
variantkey
Numerical Encoding for Human Genetic Variants
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
wecall
Fast, accurate and simple to use command line tool for variant detection in NGS data.
Genomics's Repositories
Genomicsplc/variantkey
Numerical Encoding for Human Genetic Variants
Genomicsplc/ukb-pret
Genomicsplc/SEW
SEW
Genomicsplc/rusqlite
Ergonomic bindings to SQLite for Rust
Genomicsplc/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Genomicsplc/cgat-core
Core functionality of the CGAT code
Genomicsplc/poetry
Python dependency management and packaging made easy.
Genomicsplc/sbpack
Command line utility to pack and upload/download CWL to/from SB powered platform
Genomicsplc/SoftEtherVPN_Stable
Cross-platform multi-protocol VPN software. This repository is officially managed by Daiyuu Nobori, the founder of the project. Pull requests should be sent to the master repository at https://github.com/SoftEtherVPN/SoftEtherVPN.
Genomicsplc/ultrajson
Ultra fast JSON decoder and encoder written in C with Python bindings
Genomicsplc/ansible-style-guide
Style guide for writing Ansible
Genomicsplc/arvados
An open source platform for managing and analyzing biomedical big data
Genomicsplc/bats-core
Bash Automated Testing System
Genomicsplc/bioconda-recipes
Conda recipes for the bioconda channel.
Genomicsplc/dehydrated
letsencrypt/acme client implemented as a shell-script – just add water
Genomicsplc/docker-ci-dind
Docker-in-docker container to run Gitlab CI jobs (PUBLIC)
Genomicsplc/flare
The flare program performs local ancestry inference
Genomicsplc/instant
A std::time::Instant replacement that works on WASM too.
Genomicsplc/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Genomicsplc/poetry-core
Poetry PEP 517 Build Backend & Core Utilities
Genomicsplc/python-profiling-tutorial
Profiling Tutorial
Genomicsplc/rust-bindgen
Automatically generates Rust FFI bindings to C (and some C++) libraries.
Genomicsplc/serde_rusqlite
Serialize/deserialize rusqlite rows
Genomicsplc/singularity
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.
Genomicsplc/terraform-provider-dns
Terraform DNS provider
Genomicsplc/testcafe-reporter-xunit
This is the xUnit reporter plugin for TestCafe.
Genomicsplc/wasm-bindgen
Facilitating high-level interactions between Wasm modules and JavaScript
Genomicsplc/wasmer-js
Monorepo for Javascript WebAssembly packages by Wasmer
Genomicsplc/web-cctray
Web-based dashboard for CI/CD cctray.xml files
Genomicsplc/yaml-rust
A pure rust YAML implementation.