Pinned Repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
RS3
A library interfacing libs3 to R
rusqlite
Ergonomic bindings to SQLite for Rust
SEW
SEW
slurm-drmaa
DRMAA for Slurm imported from PSNC SVN
ukb-pret
ultrajson
Ultra fast JSON decoder and encoder written in C with Python bindings
variantkey
Numerical Encoding for Human Genetic Variants
wecall
Fast, accurate and simple to use command line tool for variant detection in NGS data.
Genomics plc's Repositories
Genomicsplc/wecall
Fast, accurate and simple to use command line tool for variant detection in NGS data.
Genomicsplc/bindmapfuse
Genomicsplc/conda-recipes
build and test recipes for conda
Genomicsplc/letsencrypt-mythic-dns01
Hook script for letsencrypt.sh to use Mythic Beasts DNS API
Genomicsplc/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
Genomicsplc/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Genomicsplc/RS3
A library interfacing libs3 to R
Genomicsplc/slurm-drmaa
DRMAA for Slurm imported from PSNC SVN
Genomicsplc/statsd
Daemon for easy but powerful stats aggregation
Genomicsplc/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
Genomicsplc/ami-creator
Basic tool to create AMIs for EC2 based off of a kickstart config
Genomicsplc/flashpca
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
Genomicsplc/hail
Scalable genetic data analysis.
Genomicsplc/ldsc
LD Score Regression (LDSC)
Genomicsplc/pguint
unsigned integer types extension for PostgreSQL
Genomicsplc/ruffus
Ruffus is a lightweight python module for running computational pipelines.
Genomicsplc/sge_spark
The configuration and scripts for using spark within a Sun Grid Engine environment
Genomicsplc/su-exec
switch user and group id and exec
Genomicsplc/web-cctray
Web-based dashboard for CI/CD cctray.xml files