Pinned Repositories
birch-beer
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
fasta
The Fasta type as used by my programs.
find-clumpiness
Find the clumpiness of labels in a Haskell or JSON formatted tree.
heatitup
Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
hierarchical-spectral-clustering
Hierarchical spectral clustering of a graph.
multiomics-single-cell-t1d
Supplementary code for paper
ploterific
Basic plotting of tabular data for the command line.
spectral-clustering
Library for spectral clustering.
too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
tooManyCellsR
An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
GregorySchwartz's Repositories
GregorySchwartz/too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
GregorySchwartz/tooManyCellsR
An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
GregorySchwartz/ploterific
Basic plotting of tabular data for the command line.
GregorySchwartz/hierarchical-spectral-clustering
Hierarchical spectral clustering of a graph.
GregorySchwartz/birch-beer
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
GregorySchwartz/multiomics-single-cell-t1d
Supplementary code for paper
GregorySchwartz/spectral-clustering
Library for spectral clustering.
GregorySchwartz/heatitup
Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
GregorySchwartz/pdf2pptx
Convert your (Beamer) PDF slides to (Powerpoint) PPTX
GregorySchwartz/span
Executes the SPAN algorithm to cluster a list of records
GregorySchwartz/sparse-linear-algebra
Numerical computation in native Haskell
GregorySchwartz/too-many-cells-paper-analyses
Collection of scripts used in the TooManyCells paper
GregorySchwartz/collapse-duplication
Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.
GregorySchwartz/differential
Finds out whether an entity comes from different distributions (statuses).
GregorySchwartz/dotfiles
GregorySchwartz/elbow
Use rotations to identify the elbow point of a two-dimensional long-tailed distribution.
GregorySchwartz/GregorySchwartz.github.io
Personal website
GregorySchwartz/Haskell-Turtle-Library
Shell programming, Haskell style
GregorySchwartz/heatitup-complete
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.
GregorySchwartz/hvega-theme
A professional theme for publication quality figures.
GregorySchwartz/journal_title_abbreviations
Journal title abbreviations file to be used with pandoc-citeproc
GregorySchwartz/matrix-market-attoparsec
Attoparsec parsers for the NIST Matrix Market format
GregorySchwartz/modularity
Find the modularity of a network.
GregorySchwartz/nixpkgs
Nix Packages collection
GregorySchwartz/ox-hugo
A carefully crafted Org exporter back-end for Hugo
GregorySchwartz/reveal.js-d3
Full integration of animated javascript-based visualizations (D3, vega-lite, semiotic, etc ...) into Reveal.js presentations
GregorySchwartz/starter-hugo-academic
🎓 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
GregorySchwartz/streaming-utils
experimental http, attoparsec and pipes material for `streaming` and `streaming-bytestring`
GregorySchwartz/styles
Official repository for Citation Style Language (CSL) citation styles.
GregorySchwartz/tex-join-bib
Compile separate tex files with the same bibliography.