parse error (not enough input)
acpandey opened this issue · 3 comments
I am trying to run on docker with a windows 10 system. not sure if my system is running out of memory or there is another issue. Thinking it is not only a memory issue since usually that has not thrown an error for me in the past.
C:\Users\acpan
λ docker run -i --rm -v C:\Users\acpan\too-many-cells\too-many-cells\filtered_feature_bc_matrix:/filtered_feature_bc_matrix/ gregoryschwartz/too-many-cells:0.2.2.0 make-tree --no-filter --normalization NoneNorm --draw-max-node-size 40 --draw-max-leaf-node-size 70 --matrix-path /filtered_feature_bc_matrix/ --output /filtered_feature_bc_matrix/out/ --labels-file /filtered_feature_bc_matrix/labels.csv
Recording tree measurements [======================>......................] 50%too-many-cells: parse error (not enough input) at ""
CallStack (from HasCallStack):
error, called at src/BirchBeer/Load.hs:45:33 in birch-beer-0.2.2.0-GoLgVIKGefMG9Opfue2NME:BirchBeer.Load
C:\Users\acpan
λ docker info
Client:
Debug Mode: false
Server:
Containers: 0
Running: 0
Paused: 0
Stopped: 0
Images: 1
Server Version: 19.03.8
Storage Driver: overlay2
Backing Filesystem:
Supports d_type: true
Native Overlay Diff: true
Logging Driver: json-file
Cgroup Driver: cgroupfs
Plugins:
Volume: local
Network: bridge host ipvlan macvlan null overlay
Log: awslogs fluentd gcplogs gelf journald json-file local logentries splunk syslog
Swarm: inactive
Runtimes: runc
Default Runtime: runc
Init Binary: docker-init
containerd version: 7ad184331fa3e55e52b890ea95e65ba581ae3429
runc version: dc9208a3303feef5b3839f4323d9beb36df0a9dd
init version: fec3683
Security Options:
seccomp
Profile: default
Kernel Version: 4.19.76-linuxkit
Operating System: Docker Desktop
OSType: linux
Architecture: x86_64
CPUs: 9
Total Memory: 47.07GiB
Name: docker-desktop
ID: NX5S:K2SQ:E262:C2MZ:XI77:FYJP:HN54:MNWC:LENB:BKF5:HRBU:HYKF
Docker Root Dir: /var/lib/docker
Debug Mode: true
File Descriptors: 41
Goroutines: 54
System Time: 2020-07-27T17:53:04.461267527Z
EventsListeners: 4
Registry: https://index.docker.io/v1/
Labels:
Experimental: false
Insecure Registries:
127.0.0.0/8
Live Restore Enabled: false
Product License: Community Engine
Looks like the labels.csv file is not formatted correctly. You might have a column mismatch, an empty line, etc.
thanks worked. had redone the labels.csv file and forgotten to add the header line.
Great to hear it worked!