The pipeline crashed with error message

Question

The pipeline crashed with error message

smarhon opened this issue 3 years ago · 3 comments

Answer 1 · 2021-12-03T19:47:21.000Z

I am trying to run the pipeline on the cluster, but the pipeline crashes with this error message. too-many-cells: /scratch/3950086: openTempFile: does not exist (No such file or directory). Does it mean the pipeline could not create temporary folder/file?

Answer 2 · 2021-12-03T21:45:46.000Z

It is likely that you do not have permission for the current $TMPDIR, try changing that variable in your shell or script to some other directory to store temporary files. Either permanently in your ~/.bashrc or temporarily: export TMPDIR=/path/to/a/directory/you/own.

Answer 3 · 2021-12-04T03:33:12.000Z

Thanks! yes, that solved the problem. It was permission issue.