HUPO-PSI/mzTab

Issues

• Representing Spectra Collection

  #222 opened 4 months ago by YasinEl
  3

• File Hashes for Unique Identification

  #221 opened 4 months ago by YasinEl
  2

• MS Run Identifiers (MRIs)

  #220 opened 4 months ago by YasinEl
  2

• Library spectrum USI column in SME table

  #224 opened 4 months ago by YasinEl
  0

• Spectral representation in SMF table

  #223 opened 4 months ago by YasinEl
  0

• Metadata should contain a license field

  #218 opened 4 months ago by nilshoffmann
  0

• mzTab-M to MetaboLights ISA converter

  #206 opened 3 years ago by nilshoffmann
  3

• Consider extension of metadata to contain analysis-type

  #215 opened 5 months ago by nilshoffmann
  0

• Update adducts regex

  #211 opened 6 months ago by Adafede
  3

• Assay name is mandatory in specification but validator does not complain

  #213 opened 5 months ago by nilshoffmann
  1

• Question: Application of non unique evidence_ID (with multiple ids/adducts)

  #110 opened 9 months ago by oliveralka
  5

• Multiplicity for instrument analyzer is 1, should be *

  #185 opened 4 years ago by nilshoffmann
  0

• Support ORCID in MTD secition

  #202 opened 3 years ago by sneumann
  4

• Missing EDAM entry for mzTab-M

  #203 opened 3 years ago by sneumann
  2

• Relax requirements for SML table, relax requirements for SMF charge to allow null

  #210 opened a year ago by nilshoffmann
  0

• avoid raw github URLs for ontologies in the spec

  #205 opened 3 years ago by cmungall
  1

• Unable to upload mzTab file on PRIDE

  #201 opened 9 months ago by sid1707
  2

• wtab experiment from Metabolomics Workbench

  #109 opened 7 years ago by ypriverol
  4

• mzTab conversion to dataframe

  #200 opened 4 years ago by eeko-kon
  6

• encoding DIA results in mzTab 1.0

  #182 opened 5 years ago by ypriverol
  11

• make 'MTD title' mandatory

  #175 opened 6 years ago by lars20070
  1

• Reporting stable isotoped labeled metabolites

  #179 opened 5 years ago by MKoesters
  5

• Trailing tab characters

  #181 opened 5 years ago by bernt-matthias
  6

• Document software ecosystem for mzTab-M 2.0

  #180 opened 5 years ago by sneumann
  3

• Improperly formatted example mztab-m files for spectra reference

  #178 opened 5 years ago by mwang87
  11

• CV Terms for mzTab-m 2.0.0

  #108 opened 5 years ago by nilshoffmann
  11

• Genome Coordinates into mzTab proteomics

  #177 opened 6 years ago by ypriverol
  1

• Posttranslational modifications with multiple sites not valid

  #176 opened 6 years ago by ypriverol
  7

• Use of identifiers.org

  #171 opened 6 years ago by andrewrobertjones
  3

• Use of compact URI

  #172 opened 6 years ago by andrewrobertjones
  2

• InChI: recommend standard InChI

  #174 opened 6 years ago by sneumann
  1

• Add isotopomer validation rule to mapping file

  #173 opened 6 years ago by nilshoffmann
  0

• SML best_id_confidence_measure (spec doc 6.3.12)

  #164 opened 6 years ago by andrewrobertjones
  2

• Some issues with file MTBLS263

  #163 opened 6 years ago by andrewrobertjones
  4

• How to encode non-numeric id_confidence_value values?

  #140 opened 6 years ago by nilshoffmann
  5

• database-url is mandatory but has no alternative for "no database" case

  #146 opened 6 years ago by nilshoffmann
  2

• small_molecule_feature-quantification_unit is mandatory but SMF table is only recommended

  #147 opened 6 years ago by nilshoffmann
  1

• Should we switch to database-uri?

  #144 opened 6 years ago by nilshoffmann
  2

• XLMOD integration into OLS

  #151 opened 7 years ago by nilshoffmann
  1

• Fix GitHub paths to 2_0

  #143 opened 7 years ago by nilshoffmann
  2

• assay[1-n]-external_uri Example for MetaboLights

  #117 opened 7 years ago by sneumann
  1

• Resurrect col_unit elements, especially for optional columns

  #131 opened 7 years ago by nilshoffmann
  5

• mzTab version number 1.1 or 2.0??

  #129 opened 7 years ago by andrewrobertjones
  5

• SME collated or separated over several MS-runs – coelution and varying levels of evidence

  #133 opened 7 years ago by hartler
  1

• Sample/assay/study variable diagram descriptions are the wrong way around

  #126 opened 7 years ago by kayrein
  2

• Fix broken links in README.md

  #122 opened 7 years ago by nilshoffmann
  1

• In the line 45. MTBLS263 should be CV param

  #105 opened 7 years ago by rsalek
  2

• study_variable[1-n]_average_function and study_variable[1-n]_variation_function

  #118 opened 7 years ago by sneumann
  1

• Allow Travis access

  #114 opened 7 years ago by nilshoffmann
  4

• Add example for ND database

  #104 opened 7 years ago by nilshoffmann
  3