Genetic variant annotation and functional effect prediction toolbox. It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes).
- Install Java
- Install snpEff
- In Linux shell
1. apt-get update
2. sudo apt-get install openjdk-8-jdk
3. which javac or readlink -f /usr/bin/javac # javac path
4. sudo vi /etc/profile
add export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64
export PATH=$JAVA_HOME/bin/:$PATH
export CLASS_PATH=$JAVA_HOME/lib:$CLASS_PATH
5. source /etc/profile
echo $JAVA_HOME
1. wget http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip
2. unzip snpEff_latest_core.zip