HaNjIhEoN1

Pinned Repositories

DESeq2GO-Workflow
Workflow from DESeq2 to Gene ontology analysis using TopGO for non-model organisms
Language:R00
fastqc
Language:Shell00
GAPIT
Genome Association Predict Integrate Tools
Language:R00
GO_KEGG_enrichment_analysis_for_rice_genes
Language:R00
GWAS_Pipelines
Instructions and helpful R code for Running GEMMA and GAPIT
Language:R00
hmp2vcf
Language:Shell00
LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
Language:Perl10
Resequencing
Language:Shell10
RNAseq
Language:Jupyter Notebook20
snpEFF
Language:Jupyter Notebook20

HaNjIhEoN1's Repositories

HaNjIhEoN1/RNAseq
Language:Jupyter Notebook20
HaNjIhEoN1/snpEFF
Language:Jupyter Notebook20
HaNjIhEoN1/LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
Language:Perl10
HaNjIhEoN1/Resequencing
Language:Shell10
HaNjIhEoN1/DESeq2GO-Workflow
Workflow from DESeq2 to Gene ontology analysis using TopGO for non-model organisms
Language:R00
HaNjIhEoN1/fastqc
Language:Shell00
HaNjIhEoN1/GAPIT
Genome Association Predict Integrate Tools
Language:R00
HaNjIhEoN1/GO_KEGG_enrichment_analysis_for_rice_genes
Language:R00
HaNjIhEoN1/GWAS_Pipelines
Instructions and helpful R code for Running GEMMA and GAPIT
Language:R00
HaNjIhEoN1/hmp2vcf
Language:Shell00
HaNjIhEoN1/LDblockshowpractice
HaNjIhEoN1/LDkit
LDkit: a parallel computing toolkit for linkage disequilibrium analysis
HaNjIhEoN1/opencv
Language:Jupyter Notebook
HaNjIhEoN1/org.Osativa.eg.db
HaNjIhEoN1/plink
Language:Python
HaNjIhEoN1/PopLDdecay
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
HaNjIhEoN1/rice-id-convert
Language:Jupyter Notebook
HaNjIhEoN1/scripts
Scripts for analysis used during the course
HaNjIhEoN1/sickle
Windowed Adaptive Trimming for fastq files using quality
HaNjIhEoN1/SumTool
:hammer: Tool for GWAS summary-level data analysis