HasiHays
Computational Systems Biology, Computational Biophysics
University of ArkansasFayetteville, Arkansas, USA
Pinned Repositories
2020plus
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
awesome-biology
Curated (meta)list of resources for Biology.
awesome-cheminformatics
A curated list of Cheminformatics libraries and software.
awesome_spatial_omics
tools and notes for spatial omics
breast-cancer-sub-types
A novel self-supervised feature extraction method using omics data is proposed which improves classification in most of the classifiers.
CellClassificationMachineLearning
Single Cell Classification using RNA-seq data and Supervised Learning Algorithms
cheminformatics
Facilitates searching, screening, and organizing large chemical databases
Computational-Medicine
PyBioNetGen
A simple CLI for BioNetGen
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
HasiHays's Repositories
HasiHays/tcga_example
HasiHays/LungCancerDetection
Use CNN to detect nodules in LIDC dataset.
HasiHays/iOmicsPASS
Data Integration tool utilizing network information for predictive analyses
HasiHays/DiTaxa
Nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection
HasiHays/Granatum
HasiHays/pine-bot-client
Trading bot using Pine script
HasiHays/examples
A repository to host extended examples and tutorials.
HasiHays/celseq2
Generate the UMI count matrix from CEL-Seq2 sequencing data
HasiHays/Playing-with-Qunatum-Computing
Trying out different libraries, notes, codes
HasiHays/biocellion-cellsorting
Cell sorting model in Biocellion 3.1
HasiHays/CellSort
This toolbox includes routines for using principal component analysis (PCA)
HasiHays/scRNASeqPipeline
HasiHays/HotMAPS
Detects hotspot regions for somatic mutations in 3D protein structures
HasiHays/molecular-design-toolkit
Notebook-integrated tools for molecular simulation and visualization
HasiHays/PrecisionMedicineToolkit
Search public databases for given genotypic information
HasiHays/skincancer
Skin cancer detection project
HasiHays/Deep-Neural-Networks-HealthCare
Tangible and Practical Deep Learning Projects Repository for Healthcare such as Cancer, Drug Discovery, Genomic and More
HasiHays/TPRM
TPRM: Tensor partition regression models with applications in imaging biomarker detection
HasiHays/tf_metadynamics
Using neural networks for enhanced sampling in computational biophysics
HasiHays/DASH-public
A GPU-accelerated molecular dyanmics engine controlled through a powerful python interface
HasiHays/Pyth-Ion
Pyth-Ion Nanopore Analysis
HasiHays/bioc2016singlecell
Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
HasiHays/bio331-utils
Utility functions for Reed College Bio331: Computational Systems Biology.
HasiHays/pytcga
DEPRECATED: Store and query public TCGA data
HasiHays/DeDaL
DeDaL (Data-Driven network Layout) is a Cytoscape 3.0 app developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris).
HasiHays/jupyter-genomics
A collection of Jupyter notebooks authored by the UCSD Center for Computational Biology & Bioinformatics (http://compbio.ucsd.edu). These include methods on utilizing cloud computing resources and analysis of data from next-generation sequencing, systems biology, and microbiome.
HasiHays/CellClassificationMachineLearning
Single Cell Classification using RNA-seq data and Supervised Learning Algorithms
HasiHays/pan_cancer
HasiHays/smart-precision-cancer-medicine
SMART Genomics: Precision Cancer Medicine
HasiHays/MOOSE
MOOSE is the Multiscale Object-Oriented Simulation Environment. It is the base and numerical core for large, detailed simulations including Computational Neuroscience and Systems Biology.