HasiHays
Computational Systems Biology, Systems Medicine
University of ArkansasFayetteville, Arkansas, USA
Pinned Repositories
2020plus
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
awesome-biology
Curated (meta)list of resources for Biology.
awesome-cheminformatics
A curated list of Cheminformatics libraries and software.
awesome_spatial_omics
tools and notes for spatial omics
breast-cancer-sub-types
A novel self-supervised feature extraction method using omics data is proposed which improves classification in most of the classifiers.
CellClassificationMachineLearning
Single Cell Classification using RNA-seq data and Supervised Learning Algorithms
cheminformatics
Facilitates searching, screening, and organizing large chemical databases
Computational-Medicine
PyBioNetGen
A simple CLI for BioNetGen
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
HasiHays's Repositories
HasiHays/diffusion-simulation
HasiHays/gillespie-algorithm-simulation
HasiHays/networkx
Network Analysis in Python
HasiHays/pysb
Python framework for Systems Biology modeling
HasiHays/Systems_Biology_Textbook
A GitHub repository holding chapters of the book – “A Textbook on Computational Systems Biology.” Author: Biplab Bose, Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Assam, India, PIN- 781039. All the contents of this repository are provided under the Creative Commons License “CC BY-NC-ND 4.0”
HasiHays/_2022_functional-sites-cagiada
Discovering functionally important sites in proteins
HasiHays/afm-software-list
Management of our curated AFM software list
HasiHays/BioMASS.jl
Julia interface to BioMASS
HasiHays/cellular-signaling-data
cellular signaling data
HasiHays/cgview-js
CGView.js creates interactive circular and linear genome maps.
HasiHays/computational-biophysics-2
Notes from the course of Computational Biophysics of professor Tubiana and Lattanzi, unitn, QCB 2022-2023
HasiHays/dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
HasiHays/gh-actions-importer
GitHub Actions Importer helps you plan and automate the migration of Azure DevOps, CircleCI, GitLab, Jenkins, and Travis CI pipelines to GitHub Actions.
HasiHays/hisat2
Graph-based alignment (Hierarchical Graph FM index)
HasiHays/Logic-Based-Dynamic-Model-for-Cardiac-Fibrosis-in-DCM-Patients
This is my 3rd PhD project where I have used RNASeq data to build a patient specific logic based dynamical model from previously built fibrosis model
HasiHays/manim
Animation engine for explanatory math videos
HasiHays/MassiveFold
HasiHays/Mathfs
Expanded Math Functionality for Unity
HasiHays/MonitorControl
🖥 Control your display's brightness & volume on your Mac as if it was a native Apple Display. Use Apple Keyboard keys or custom shortcuts. Shows the native macOS OSDs.
HasiHays/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
HasiHays/PyJibe
GUI for AFM data analysis with an emphasis on biological specimens
HasiHays/Qunatum_Computing_For_Computer_Scientists
HasiHays/scBONITA
Regulatory rule inference, pathway analysis, and cell signaling analysis with scRNAseq data
HasiHays/Searchlight2
Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
HasiHays/Sire
Sire Molecular Simulations Framework
HasiHays/SlicerCBM
Computational Biophysics for Medicine in 3D Slicer
HasiHays/SpaTalk
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
HasiHays/spateo-viewer
Web application demonstrating 3D modeling of spatial transcriptomics
HasiHays/STEPS
Public release repository for STochastic Engine of Pathway Simulation (STEPS)
HasiHays/tyssue
An epithelium simulation library