HealthML/active-segmentation
ActiveSegmentation: A Simulation Framework for Benchmarking Active Learning Strategies for 3D Medical Image Segmentation
PythonAGPL-3.0
Issues
- 0
Multi-GPU Training Issues
#160 opened by funkyZhaofour - 0
bug in doubly_shuffled_nifti_dataset.py
#159 opened by funkyZhaofour - 0
Start Writing Results Section
#153 opened by Jasperhino - 0
Start Writing Methodology
#148 opened by Jasperhino - 0
Write Model Architecture Section
#150 opened by Ijusttyped - 0
Write Query Strategy Section
#152 opened by Ijusttyped - 1
Run Experiments
#140 opened by Jasperhino - 0
Write Related Work Section
#149 opened by Jasperhino - 0
Check why interpolation sometimes does not add enough slices to training set
#147 opened by josafatburmeister - 1
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Documentation of all config file parameters
#113 opened by jonaskordt - 0
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- 0
Reduce loss for pseudo labels
#137 opened by jonaskordt - 0
Clean up and test readme, etc.
#139 opened by Jasperhino - 0
Reduce loss weight of pseudo labels
#131 opened by jonaskordt - 0
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Add focal loss
#128 opened by jonaskordt - 0
Fix size computation and distribution across workers for BCSS dataset
#95 opened by josafatburmeister - 0
Implement normalised surface distance
#66 opened by josafatburmeister - 0
Query Strategies for 3D model
#111 opened by jonaskordt - 0
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Fix Sensitivity NaN
#110 opened by jonaskordt - 0
implement query strategy that combines representativeness and uncertainty sampling
#103 opened by josafatburmeister - 1
What is happening to our 3D models?
#115 opened by jonaskordt - 0
Implement Representativeness Query Strategy
#69 opened by Jasperhino - 0
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Implement label_items method in DataModule classes
#109 opened by Ijusttyped - 0
Implement loss functions
#107 opened by Ijusttyped - 0
Discuss project folder structure
#108 opened by Ijusttyped - 0
Adapt Dice loss to be a positive number
#50 opened by josafatburmeister - 0
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Integrate CI Pipeline for linting
#106 opened by Ijusttyped - 0
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Search for possible conferences to submit to
#82 opened by JohannesHa - 0
Implement Cost-Effective Active Learning
#70 opened by Jasperhino - 0
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Heatmap for Uncertainty
#68 opened by Jasperhino - 0
W&B Logging
#80 opened by jonaskordt - 0
Uncertainty Sampling
#63 opened by Jasperhino - 0
Evaluation run
#44 opened by josafatburmeister - 0
Implement Active Learning Loop
#55 opened by Jasperhino - 0
add smoothing to cross-entropy loss
#77 opened by josafatburmeister - 0
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Fix checkpoint loading
#71 opened by Jasperhino - 0
Implement Decathlon Test Dataset
#54 opened by Jasperhino - 0
Testing for per-epoch/per-scan metric (for both 2d and 3d predictions)
#47 opened by josafatburmeister