This is a repo for the publication "Epigenetic Regulation During Cancer Transitions Across 11 Tumor Types"
Repo structure
-
Fig1: Overview of chromatin accessibility pattern across 11 cancer types.
-
Fig2: CREs regulating transcriptional programs in cancer.
-
Fig3: Pan-Cancer and cancer-specific regulons.
-
Fig4: Transcriptional programs activated in cancer metastasis.
-
Fig5: Genetic drivers impact on chromatin accessibility.
Use Sample_ID_Lookup_table.xlsx to find data on HTAN DCC, GDC and CDS
For cell type annotation refer to this Synapse page https://www.synapse.org/#!Synapse:syn51364714/files/