HediaTnani
Staff Scientist I @ LIBD | Data Science enthusiast | R & Python passionate | R-Ladies Tunis Co-founder
Lieber Institute for Brain DevelopmentBaltimore
Pinned Repositories
30DayChartChallenge
ABN_Covid_19Workgroup
Involved in Mapping, variant calling and Phylogenetics
Bio-containers
BioNextflow
Library of biological tools for Nextflow
biostatistics
A free biostatistics reading list :)
crs19-monitor
Monitor of SARS-CoV-2 variants and mutations in Europe
gradual_shiny
Workshop introducing Shiny programming concepts
Leishmania
functions and documents
Machine_Learning_with_Python
An introduction to Machine Learning with Python and SciKit
meetup-presentations_brisbane
HediaTnani's Repositories
HediaTnani/30DayChartChallenge
HediaTnani/ABN_Covid_19Workgroup
Involved in Mapping, variant calling and Phylogenetics
HediaTnani/BioNextflow
Library of biological tools for Nextflow
HediaTnani/crs19-monitor
Monitor of SARS-CoV-2 variants and mutations in Europe
HediaTnani/gradual_shiny
Workshop introducing Shiny programming concepts
HediaTnani/Machine_Learning_with_Python
An introduction to Machine Learning with Python and SciKit
HediaTnani/minigraph
HediaTnani/ml-in-practice
A demo repo for best practices in ML for R and Python
HediaTnani/ml_cnag-crg_course
HediaTnani/novograph
HediaTnani/Resume
A website for my resume
HediaTnani/RladiesTalk21
HediaTnani/slc-rug-21
Source code and slides for my Salt Lake City R User Group talk
HediaTnani/write-docker-actions
HediaTnani/2021-rpkgdev
HediaTnani/bioconda-recipes
Conda recipes for the bioconda channel.
HediaTnani/Bioinformatics-Machine-Learning
Notebooks from the course
HediaTnani/bioservices
Access to Biological Web Services from Python.
HediaTnani/CoursesCRG_Containers_Nextflow_May_2021
Slow-paced 4-day containers and Nextflow course for beginners.
HediaTnani/CPSC392ParlettPelleriti
HediaTnani/deep-learning-gene-expression
Deep learning methods for feature selection in gene expression autism data.
HediaTnani/KEGGscape
A Cytoscape app for importing KGML(KEGG pathway XML)
HediaTnani/MetReFIT
Brute force algorithm for finding biosynthetic gaps in COBRA formated constraint-based metabolic models. Can provide models or reaction databases of related species with relative scores on how closely related they are to attempt to fill in gaps. Handles reactions from multiple databases including KEGG, modelSEED, and MetaCyc to attempt to fill.
HediaTnani/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
HediaTnani/Physalia_ML
HediaTnani/prs
Polygenic Risk Scores Pipeline to calculate genetic risk score for any given phenotype/trait (using PRSice)
HediaTnani/scRNA-seq
HediaTnani/single_cell_rna_seq_workshop
repository for the single cell RNA-Seq workshop
HediaTnani/snakemake
Snakemake template with a slurm profile (marcc).
HediaTnani/tutorials
:books: Various bioinformatics tutorials