HeliXonProtein/OmegaFold

Issues

• Primary sequence

  #76 opened a month ago by drdoppio
  0

• OmegaFold weights for Mac / apple silicon

  #75 opened 5 months ago by linkerst
  0

• Exception: Python 3.11.4 (tags/v3.11.4:d2340ef, Jun 7 2023, 05:45:37) [MSC v.1934 64 bit (AMD64)] is not supported.

  #69 opened a year ago by Herutriana44
  5

• Difference between model 1 and 2

  #73 opened a year ago by mcn3159
  2

• Google collab error

  #74 opened a year ago by irinasspider
  6

• Where can I find the confidence value of a Prediction on Omegafold ?

  #55 opened 2 years ago by PierrePaillard
  2

• Next Omegafold

  #72 opened a year ago by smilenaderi
  3

• Geoformer implementation is different from EdgeAttention described in paper

  #71 opened a year ago by jimmieliu
  0

• Will there be OmegaFold_Multimer?

  #44 opened 2 years ago by DaHenz
  4

• Exporting model to ONNX format

  #70 opened a year ago by elephantpanda
  0

• Model 2 error

  #67 opened 2 years ago by vvishwesh
  1

• Model 2 subbatch_size not working

  #64 opened 2 years ago by smilenaderi
  3

• ModuleNotFoundError: No module named 'torch'

  #68 opened a year ago by ana1878
  0

• CUDA error: unknown error

  #66 opened 2 years ago by puddleglum56
  0

• Why does the edges produced in OmegaPLM become shape (PLM_layers, n , n) instead of (Layers, batch size, n , n)

  #65 opened 2 years ago by WBennett003
  0

• Broken prolines ?

  #63 opened 2 years ago by Lotirador
  0

• Issues with running model2

  #62 opened 2 years ago by s-kyungyong
  1

• OmegaFold - Masking specific residues in input FASTA?

  #61 opened 2 years ago by amorehead
  0

• Can omegaFold be used to predict the composite structure of the heavy and light chains of the antibody

  #60 opened 2 years ago by Licko0909
  0

• OmegaPLM

  #16 opened 2 years ago by YumengYan
  2

• Confidence metric

  #46 opened 2 years ago by Geraldene
  4

• About the possibility of creating decoys (low quality models)

  #59 opened 2 years ago by imabio
  0

• 2nd model release - is 7KPJ part of the train set in this model ?

  #58 opened 2 years ago by YoelShoshan
  0

• where is 3DPorjection function implemented in the ./decoder/StructureModule?

  #57 opened 2 years ago by Kewei2023
  0

• A100 VS A40 performance issue

  #40 opened 2 years ago by truatpasteurdotfr
  2

• OSError: libcudnn.so.8: cannot open shared object file: No such file or directory

  #54 opened 2 years ago by charlesdavid
  0

• libcupti.so.11.2: cannot open shared object file

  #53 opened 2 years ago by biotech70
  0

• SubBatching

  #52 opened 2 years ago by YoelShoshan
  0

• Parameters Initialization

  #51 opened 2 years ago by YoelShoshan
  0

• When running on https://biolib.com/protein-tools/omegafold/ with a fasta file, this error showed up

  #50 opened 2 years ago by Jeffery-Ni
  1

• In-Place Softmax Breaks AutoDiff

  #38 opened 2 years ago by countrsignal
  5

• output x best models

  #41 opened 2 years ago by FlorianWieser1
  1

• Training Code Availability

  #47 opened 2 years ago by YoelShoshan
  1

• OOM issue when working with gradient

  #48 opened 2 years ago by WANG-CR
  1

• Some questions about model training

  #49 opened 2 years ago by WangHuiNEU
  1

• 'Unsupported datatype for constant' when trying to run on a M1 Pro

  #36 opened 2 years ago by cdsnow
  5

• Reproducing Antibodies/Orphans results

  #45 opened 2 years ago by benoitgaujac
  0

• Help with Install

  #43 opened 2 years ago by joonp9
  0

• device option

  #42 opened 2 years ago by rmarabini
  1

• Training code

  #30 opened 2 years ago by lhatsk
  1

• RuntimeError: CUDA out of memory.

  #37 opened 2 years ago by biotech70
  1

• pseudo MSAs in OmegaPLM

  #34 opened 2 years ago by BSharmi
  1

• output plddt?

  #39 opened 2 years ago by pengzhangzhi
  1

• Installing OmegaFold in Ubuntu v22.04

  #33 opened 2 years ago by biotech70
  3

• Motif & sub-sequence masking

  #32 opened 2 years ago by CatIIIIIIII
  0

• Reproducing CASP results

  #31 opened 2 years ago by lhatsk
  1

• License for weight parameter file

  #29 opened 2 years ago by xvtyzn
  0

• Out of memory for the training of 1 layer of GeometricAttention

  #28 opened 2 years ago by Zhang038
  0

• Error when running inference on CPU

  #24 opened 2 years ago by Meteord
  2

• About the AtomEmbedder

  #17 opened 2 years ago by Kirito-Ausna
  0