Pinned Repositories
AKR
AKR Superfamily Website
BMIN503
Data Science for Biomedical Informatics (BMIN503 / EPID600)
BMIN503_Final_Project
Template repo for Data Science for Biomedical Informatics (BMIN503/EPID600) final project
k12bioinformatics
Teaching materials developed as part of NSF project to teach bioinformatics through mobile learning
pargasite
Pollution-Associated Risk Geospatial Analysis SITE (PARGASITE)
qmtools
Tools for quantitative metabolomics data processing
raved
Reproducible Analysis and Validation of Expression Data
realgar
Reducing Associations by Linking Genes And transcriptomic Results (REALGAR)
snpsettest
A set-based association test using GWAS summary statistics
taffeta
RNAseq/DGE analysis pipeline
Himes Lab at the University of Pennsylvania's Repositories
HimesGroup/taffeta
RNAseq/DGE analysis pipeline
HimesGroup/BMIN503
Data Science for Biomedical Informatics (BMIN503 / EPID600)
HimesGroup/snpsettest
A set-based association test using GWAS summary statistics
HimesGroup/realgar
Reducing Associations by Linking Genes And transcriptomic Results (REALGAR)
HimesGroup/BMIN503_Final_Project
Template repo for Data Science for Biomedical Informatics (BMIN503/EPID600) final project
HimesGroup/k12bioinformatics
Teaching materials developed as part of NSF project to teach bioinformatics through mobile learning
HimesGroup/brocade
Reproducible analysis of CHIP-Seq data
HimesGroup/pargasite
Pollution-Associated Risk Geospatial Analysis SITE (PARGASITE)
HimesGroup/AKR
AKR Superfamily Website
HimesGroup/Multiomics-Analysis-of-Glucocorticoid-Response-Data
Supporting codes and data of the manuscript "Multiomics Analysis Identifies BIRC3 as a Novel Glucocorticoid Response-Associated Gene"
HimesGroup/qmtools
Tools for quantitative metabolomics data processing
HimesGroup/raved
Reproducible Analysis and Validation of Expression Data
HimesGroup/.github
HimesGroup/analysis_pipeline
TOPMed analysis pipeline
HimesGroup/Asthma_Transcriptomic_Analysis
Integration of Asthma-Related Transcriptomic Datasets
HimesGroup/asthmamaps
County-level characterisitcs of adults with asthma in the U.S. according to BRFSS data
HimesGroup/covid-19-data
An ongoing repository of data on coronavirus cases and deaths in the U.S.
HimesGroup/crispr_analysis
Workflow used to analyze CRISPR knockout screen data
HimesGroup/EPID700
Repository to Practice Using GitHub and R
HimesGroup/geocoding
Code for assisting in geocoding
HimesGroup/HLA_Typing
Scripts to compute HLA types from GWAS results
HimesGroup/LCMSQA
Quality assessment for LC/MS data
HimesGroup/PHLcovid
HimesGroup/prevalencemaps
HimesGroup/raqs
HimesGroup/raw2mzml
HimesGroup/sapphirine
Sensor-based Analysis of Pollution in the Philadelphia Region with Information on Neighborhoods and the Environment (SAPPHIRINE)
HimesGroup/shiny-server
HimesGroup/sprint
Results for NEJM SPRINT Challenge