Holy Lab

None

Washington University in St. Louis

Pinned Repositories

BlockRegistration.jl
Deformable image registration via shift-alignment of blocks
Language:Julia7 8 391
FlyThroughPaths.jl
Create "fly-throughs" in 3d visualization
Language:Julia14 3 91
GPCRAnalysis.jl
Routines for analysis of protein structures
Language:Julia7 5 01
HolyLabRegistry
Julia package registry for the Holy lab at Washington University in St. Louis
Language:Julia17 5 204
Imagine
A graphical interface for recording with OCPI microscopes.
Language:C++1 7 551
ImagineInterface.jl
Read and write Imagine analog and digital recordings and commands
Language:Julia2 8 212
NMFMerge.jl
Merging components in nonnegative matrix factorization
Language:Julia6 3 20
RegisterDeformation.jl
Representation of spatial deformations
Language:Julia7 7 54
RegisterQD.jl
Image registration with the QuadDIRECT optimization algorithm
Language:Julia15 6 156
ThickNumbers.jl
Abstract type and utility functions for numbers that also act like sets/intervals
Language:Julia90

Holy Lab's Repositories

HolyLab/HolyLabRegistry
Julia package registry for the Holy lab at Washington University in St. Louis
Language:Julia17 5 204
HolyLab/RegisterQD.jl
Image registration with the QuadDIRECT optimization algorithm
Language:Julia15 6 156
HolyLab/FlyThroughPaths.jl
Create "fly-throughs" in 3d visualization
Language:Julia14 3 91
HolyLab/ThickNumbers.jl
Abstract type and utility functions for numbers that also act like sets/intervals
Language:Julia90
HolyLab/GPCRAnalysis.jl
Routines for analysis of protein structures
Language:Julia7 5 01
HolyLab/RegisterDeformation.jl
Representation of spatial deformations
Language:Julia7 7 54
HolyLab/NMFMerge.jl
Merging components in nonnegative matrix factorization
Language:Julia6 3 20
HolyLab/GaussianRandomVariables.jl
Math (second-order accuracy) with random variables
Language:Julia5 3 00
HolyLab/CachedArrays.jl
Arrays that cache elements in leading dimensions
Language:Julia4 4 01
HolyLab/FastScanning.jl
Determine camera/laser timing during fast OCPI acquisitions based on measured hardware responses.
Language:Julia4 4 10
HolyLab/ZWarpedArrays.jl
An image array type for which each 2D slice can (lazily) undergo a different affine coordinate transformation
Language:Julia4 4 00
HolyLab/RegisterOptimize.jl
This package is separated from BlockRegistraton.
Language:Julia3 6 81
HolyLab/ExtractPSF.jl
Find point emitters in images and extract point spread functions
Language:Julia2 3 0
HolyLab/GsvdInitialization.jl
Discovery of "missing" directions in nonnegative matrix factorization
Language:Julia2 3 1
HolyLab/CenterIndexedArrays.jl
Arrays indexed symmetrically around zero
Language:Julia1 5 0
HolyLab/Diffusion.jl
Simulations of diffusion on the disc with boundary conditons
Language:Julia1 4 0
HolyLab/EcoTrialStructure.jl
Data import for experiments on neuroeconomic decision-making
Language:Julia1 4 0
HolyLab/ImageInterpLast.jl
Lazy interpolation of images along the last dimension (usually time)
Language:Julia1 4 0
HolyLab/RegisterPenalty.jl
This package is separated from BlockRegistraton.
Language:Julia1 6 11
HolyLab/StitchDPI.jl
Align and stitch pairs of images acquired with a split field of view
Language:Julia1 4 1
HolyLab/WarpedImageSeries.jl
Lazy warping of a series (usually timeseries) of images
Language:Julia1 4 0
HolyLab/Autosampler.jl
Code for interfacing Imagine with stimulus delivery
Language:Julia6 3
HolyLab/CounterMarking.jl
Analyze images from countermarking experiments
Language:Julia
HolyLab/GAMSFiles.jl
Parsing General Algebraic Modeling System files into Julia modules
Language:GAMS
HolyLab/ImagineAnalyses.jl
A collection of analyses to run on Imagine signals and images.
Language:Julia4 0
HolyLab/OlfactoryTopographicBehavior.jl
Utilities for analysis of behavioral experiments on topographic olfaction
Language:Julia4 0
HolyLab/RegisterFit.jl
RegisterFit contains a number of functions that calculate affine transformations that minimize mismatch. This package is separated from BlockRegistraton
Language:Julia7 11
HolyLab/RegisterHindsight.jl
This package is separated from BlockRegistraton.
Language:Julia7 1
HolyLab/RegisterMismatchCommon.jl
This package is separated from BlockRegistraton.
Language:Julia7 0
HolyLab/RegisterUtilities.jl
This package is separated from BlockRegistraton
Language:Julia6 0